Jizhun Wu, Lu Zhang, Zihan Zhao ...
· Cellular Senescence
· Department of Colorectal Surgery, The Second Affiliated Hospital, and Zhejiang University-University of Edinburgh Institute, Zhejiang University School of Medicine, Zhejiang University, Hangzhou 310058, China.
· pubmed
Cellular senescence is a complex biological process with a dual role in tissue homeostasis and aging-related pathologies. Accumulation of senescent cells promotes chronic inflammation, tissue dysfunction, age-related diseases, and tumor suppression. Recent advancements in immunot...
Cellular senescence is a complex biological process with a dual role in tissue homeostasis and aging-related pathologies. Accumulation of senescent cells promotes chronic inflammation, tissue dysfunction, age-related diseases, and tumor suppression. Recent advancements in immunotherapy have positioned T cell-based approaches as precision tools for the targeted clearance of senescent cells, offering a novel avenue for anti-aging interventions. This review explores the molecular mechanisms underlying cellular senescence, focusing on its immunogenic features and interactions with T cells, including T-cell activation, antigen recognition, modulation of tumor microenvironment (TME), and immune evasion strategies. Innovations such as chimeric antigen receptor (CAR)-T cells, immune checkpoint therapies, and SASP-neutralizing approaches are highlighted as breakthrough strategies for enhancing senescent cell eradication. The integration of multi-omics and artificial intelligence is further catalyzing the development of personalized therapies to amplify immune surveillance and tissue rejuvenation. Clinically, T cell-based interventions hold promise for mitigating age-related pathologies and extending healthspan, yet challenges remain in optimizing target specificity, countering immunosuppressive niches, and overcoming immune senescence in aging populations. This review synthesizes current advances and challenges, highlighting the potential of T cell immunotherapy as a cornerstone of anti-aging medicine and emphasizing the need for interdisciplinary innovation to translate preclinical findings into transformative therapies for aging and age-related diseases.
Longevity Relevance Analysis
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The paper claims that T cell immunotherapy can target and clear senescent cells to mitigate age-related pathologies and extend healthspan. This research is relevant as it addresses the underlying mechanisms of cellular senescence, which is a root cause of aging and age-related diseases, rather than merely treating symptoms.
Foley, E. E., Thomas, C. L., Kyriacou, C. ...
· genetics
· University of Leicester
· biorxiv
Epigenetic clocks based on DNA methylation provide robust biomarkers of biological age, yet the mechanistic basis and functional significance of slowing these clocks remain unclear. Progress has been limited by the lack of short-lived, genetically tractable model organisms with f...
Epigenetic clocks based on DNA methylation provide robust biomarkers of biological age, yet the mechanistic basis and functional significance of slowing these clocks remain unclear. Progress has been limited by the lack of short-lived, genetically tractable model organisms with functional DNA methylation systems. The jewel wasp, Nasonia vitripennis, offers a unique solution. It combines a functional DNA methylation system with a short lifespan and established tools for experimental manipulation. We previously developed an epigenetic clock in Nasonia, but whether this clock reflects plastic, environmentally driven ageing processes was unknown. Here, we test this directly by experimentally inducing larval diapause, a naturally occurring developmental arrest triggered by environmental cues. Diapause extended median adult lifespan by 36% and significantly slowed the rate of epigenetic ageing. Using whole-genome bisulfite sequencing across multiple adult timepoints, we show that while diapaused adults initially emerge epigenetically older, their subsequent epigenetic ageing proceeds 29% more slowly than non-diapaused controls. Clock CpGs were enriched for gene ontology terms related to conserved nutrient-sensing and developmental pathways, including insulin/IGF signaling and mTOR, supporting the established mechanistic link between development and epigenetic ageing. These findings demonstrate that epigenetic ageing is plastic and can be experimentally modulated by early-life environment, establishing Nasonia as a tractable system for dissecting the causal mechanisms of epigenetic ageing.
Longevity Relevance Analysis
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The paper claims that larval diapause can slow the rate of epigenetic ageing in the insect model Nasonia vitripennis. This research is relevant as it explores the mechanisms of epigenetic ageing and how early-life environmental factors can influence longevity, contributing to our understanding of the root causes of aging.
Zhang, Q., Dang, W., Wang, M. C.
· genetics
· HHMI Janelia Research Campus
· biorxiv
Epigenome is sensitive to metabolic inputs and crucial for aging. Lysosomes emerge as a signaling hub to sense metabolic cues and regulate longevity. We unveil that lysosomal metabolic pathways signal through the epigenome to regulate transgenerational longevity in Caenorhabditis...
Epigenome is sensitive to metabolic inputs and crucial for aging. Lysosomes emerge as a signaling hub to sense metabolic cues and regulate longevity. We unveil that lysosomal metabolic pathways signal through the epigenome to regulate transgenerational longevity in Caenorhabditis elegans. We discovered that the induction of lysosomal lipid signaling and lysosomal AMP-activated protein kinase (AMPK), or the reduction of lysosomal mechanistic-target-of-rapamycin (mTOR) signaling, increases the expression of histone H3.3 variant and elevates H3K79 methylation, leading to lifespan extension across multiple generations. This transgenerational pro-longevity effect requires intestine-to-germline transportation of H3.3 and a germline-specific H3K79 methyltransferase, and can be recapitulated by overexpressing H3.3 or the H3K79 methyltransferase. This work uncovers a lysosome-epigenome signaling axis linking soma and germline to mediate the transgenerational inheritance of longevity.
Longevity Relevance Analysis
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Lysosomal metabolic pathways signal through the epigenome to regulate transgenerational longevity in Caenorhabditis elegans. This research addresses the mechanisms underlying longevity and aging, focusing on the role of lysosomes and epigenetic changes, which are crucial for understanding and potentially manipulating the aging process.
Helen Carrasco Hope, Jana de Sostoa, Pierpaolo Ginefra ...
· Nature cancer
· Department of Oncology, University of Lausanne, Lausanne, Switzerland. helen.carrascohope@unil.ch.
· pubmed
Chimeric antigen receptor (CAR) T cell therapy is one of the most promising cancer treatments. However, different hurdles are limiting its application and efficacy. In this context, how aging influences CAR-T cell outcomes is largely unknown. Here we show that CAR-T cells generat...
Chimeric antigen receptor (CAR) T cell therapy is one of the most promising cancer treatments. However, different hurdles are limiting its application and efficacy. In this context, how aging influences CAR-T cell outcomes is largely unknown. Here we show that CAR-T cells generated from aged female mice present a mitochondrial dysfunction derived from nicotinamide adenine dinucleotide (NAD) depletion that leads to poor stem-like properties and limited functionality in vivo. Moreover, human data analysis revealed that both age and NAD metabolism determine the responsiveness to CAR-T cell therapy. Targeting NAD pathways, we were able to recover the mitochondrial fitness and functionality of CAR-T cells derived from older adults. Altogether, our study demonstrates that aging is a limiting factor to successful CAR-T cell responses. Repairing metabolic and functional obstacles derived from age, such as NAD decline, is a promising strategy to improve current and future CAR-T cell therapies.
Longevity Relevance Analysis
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The paper claims that age-associated decline in nicotinamide adenine dinucleotide (NAD) contributes to CAR-T cell dysfunction, and targeting NAD pathways can improve CAR-T cell therapy in older adults. This research is relevant as it addresses a metabolic aspect of aging that affects immune function and therapeutic efficacy, potentially leading to strategies that mitigate age-related decline in cellular function.
Sara Kirmani, Tianxiao Huan, Joseph C Van Amburg ...
· Nature communications
· Framingham Heart Study, Framingham, MA, 01702, USA.
· pubmed
With age, hematopoietic stem cells can acquire somatic mutations in leukemogenic genes that confer a proliferative advantage in a phenomenon termed CHIP. How these mutations result in increased risk for numerous age-related diseases remains poorly understood. We conduct a multira...
With age, hematopoietic stem cells can acquire somatic mutations in leukemogenic genes that confer a proliferative advantage in a phenomenon termed CHIP. How these mutations result in increased risk for numerous age-related diseases remains poorly understood. We conduct a multiracial meta-analysis of EWAS of CHIP in the Framingham Heart Study, Jackson Heart Study, Cardiovascular Health Study, and Atherosclerosis Risk in Communities cohorts (N = 8196) to elucidate the molecular mechanisms underlying CHIP and illuminate how these changes influence cardiovascular disease risk. We functionally validate the EWAS findings using human hematopoietic stem cell models of CHIP. We then use expression quantitative trait methylation analysis to identify transcriptomic changes associated with CHIP-associated CpGs. Causal inference analyses reveal 261 CHIP-associated CpGs associated with cardiovascular traits and all-cause mortality (FDR adjusted p-value < 0.05). Taken together, our study reports the epigenetic changes impacted by CHIP and their associations with age-related disease outcomes.
Longevity Relevance Analysis
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The study identifies epigenetic changes associated with CHIP that influence cardiovascular disease risk and all-cause mortality. This research is relevant as it explores the molecular mechanisms underlying age-related diseases, potentially addressing root causes of aging through the lens of somatic mutations in hematopoietic stem cells.
Chang, M., Kruessel, S., Parajuli, L. K. ...
· neuroscience
· Johns Hopkins University
· biorxiv
Recent studies have identified intercellular networks for material exchange by bridge-like nanotubular structures, yet their existence in neurons remains unexplored within the brain. Here, we identified long, thin dendritic filopodia that establish direct dendrite-to-dendrite con...
Recent studies have identified intercellular networks for material exchange by bridge-like nanotubular structures, yet their existence in neurons remains unexplored within the brain. Here, we identified long, thin dendritic filopodia that establish direct dendrite-to-dendrite contacts, forming dendritic nanotubes (DNTs) in mammalian brains. Using super-resolution microscopy, we characterized their unique molecular composition and dynamics in dissociated neurons, enabling Ca2+ propagation over distances. Utilizing imaging and machine-learning-based analysis, we confirmed the in situ presence of DNTs connecting dendrites to other dendrites whose anatomical features are distinguished from synaptic dendritic spines. DNTs mediate the active transport of small molecules or human amyloid-beta (A{beta}), implicating the role of DNT network in AD pathology. Notably, DNT levels increased prior to the onset of amyloid plaque deposits in the mPFC of APP/PS1 mice. Computational simulations predicted the progression of amyloidosis, providing insight into the mechanisms underlying neurodegeneration through these DNTs. This study unveils a previously unrecognized nanotubular network, highlighting another dimension of neuronal connectivity beyond synapses.
Longevity Relevance Analysis
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The study identifies dendritic nanotubes (DNTs) that facilitate intercellular communication and transport of molecules, implicating their role in Alzheimer's disease pathology. This research is relevant as it explores a novel mechanism that could contribute to understanding neurodegeneration, potentially addressing root causes of age-related cognitive decline.
Zhi-Qi Dai, Sha Lu, Zhen-Tong Shen ...
· Advanced healthcare materials
· State Key Laboratory of Medicinal Chemical Biology, Tianjin Key Laboratory of Biosensing and Molecular Recognition, Research Centre for Analytical Sciences, College of Chemistry, Nankai University, Tianjin, 300071, P. R. China.
· pubmed
Mitochondria play crucial roles in energy production, metabolism regulation, and cell death. Mitochondrial dysfunction is associated with many diseases, including cancers, aging, and neurodegenerative disorders. Consequently, developing methods for mitochondrial regulation and tr...
Mitochondria play crucial roles in energy production, metabolism regulation, and cell death. Mitochondrial dysfunction is associated with many diseases, including cancers, aging, and neurodegenerative disorders. Consequently, developing methods for mitochondrial regulation and treating related diseases has garnered significant interest in biological and medical research. Here, a smart framework nucleic acid (FNA) strategy is presented for mitochondrial interference and targeted cell elimination. Our approach involves the design of tetrahedral DNA nanostructures (TDNs) modified with triphenylphosphine and single-stranded DNA sequences responding to specific nucleic acid biomarkers (e.g., microRNAs) presented in target cells. The interlinked DNA networks, formed in situ responding to specific biomarkers, enable targeting and enveloping of the mitochondria, leading to mitochondrial fragmentation and dysfunction. It is demonstrated that TDN-based FNAs targeted the cancer-associated microRNA (miR-21) may enhance the efficacy of cancer therapy by disrupting mitochondrial function, while also serving as carriers of anti-cancer drugs to reduce the side effects. Additionally, FNAs targeting the senescence-associated microRNA (miR-34a) specifically eliminate senescent cells in both cell and Caenorhabditis elegans models, thereby improving overall cell viability within mixed cell populations. This programmable and functionalized TDN-based platform opens new avenues for advancing anti-aging research and treating various diseases by achieving targeted cell elimination through mitochondrial interference.
Longevity Relevance Analysis
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The paper claims that a tetrahedral DNA nanostructure can selectively eliminate senescent cells by targeting specific microRNAs associated with mitochondrial dysfunction. This research is relevant as it addresses the elimination of senescent cells, which are a contributing factor to aging and age-related diseases, thereby potentially advancing anti-aging strategies.
Guldner, I. H., Wagner, V. P., Moran Losada, P. ...
· neuroscience
· Stanford University
· biorxiv
Neurodegenerative diseases affect 1 in 12 people globally and remain incurable. Central to their pathogenesis is a loss of neuronal protein maintenance and the accumulation of protein aggregates with aging. We engineered bioorthogonal tools which allowed us to tag the nascent neu...
Neurodegenerative diseases affect 1 in 12 people globally and remain incurable. Central to their pathogenesis is a loss of neuronal protein maintenance and the accumulation of protein aggregates with aging. We engineered bioorthogonal tools which allowed us to tag the nascent neuronal proteome and study its turnover with aging, its propensity to aggregate, and its interaction with microglia. We discovered neuronal proteins degraded on average twice as slowly between 4- and 24-month-old mice with individual protein stability differing between brain regions. Further, we describe the aged neuronal \'aggregome\' encompassing 574 proteins, nearly 30% of which showed reduced degradation. The aggregome includes well-known proteins linked to disease as well as a trove of proteins previously not associated with neurodegeneration. Unexpectedly, we found 274 neuronal proteins accumulated in microglia with 65% also displaying reduced degradation and/or aggregation with age. Among these proteins, synaptic proteins were highly enriched, suggesting a cascade of events emanating from impaired synaptic protein turnover and aggregation to the disposal of these proteins, possibly by the engulfment of synapses by microglia. These findings reveal the dramatic loss of neuronal proteome maintenance with aging which could be causal for age-related synapse loss and cognitive decline.
Longevity Relevance Analysis
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The paper claims that aging leads to a dramatic loss of neuronal proteome maintenance, which could be causal for age-related synapse loss and cognitive decline. This research addresses the underlying mechanisms of aging and their impact on neurodegeneration, making it relevant to longevity studies.
Mueller, T. T., Starck, S., Llalloshi, R. ...
· bioinformatics
· TUM
· biorxiv
Understanding the process of ageing has become a highly desirable goal in human health and disease research. A multitude of factors impact the way we age and understanding their connection can help with early detection of age-related diseases and give insights into what causes ab...
Understanding the process of ageing has become a highly desirable goal in human health and disease research. A multitude of factors impact the way we age and understanding their connection can help with early detection of age-related diseases and give insights into what causes abnormal ageing. In this study, we analyse how medical images can be used as biomarkers for ageing via deep learning techniques. We evaluate ageing in different local body systems (liver, lungs, spine, intestine, muscle, heart), the brain, and across the whole body using 70,000 subjects from the UK Biobank population study. We analyse correlations between lifestyle factors --such as smoking-- or diseases and accelerated ageing. Furthermore, we show differences in survival between subjects with accelerated and decelerated ageing and study the impact of individual body regions on the whole body age by generating a Digital Twin that can aid personalised medicine. Our work gives insights into how medical imaging can be used to identify abnormal ageing both on a local and a global scale and investigates the interplay between different body regions. It can help understand ageing patterns and lay a foundation for future applications of age predictors for risk assessment.
Longevity Relevance Analysis
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The paper claims that medical images can serve as biomarkers for ageing, enabling the identification of abnormal ageing patterns and their correlations with lifestyle factors. This research is relevant as it explores the underlying mechanisms of ageing and aims to improve early detection of age-related diseases, contributing to the understanding of ageing processes.
Soldatkina, O., Ventura-San Pedro, L., El Hommad, A. ...
· genomics
· Barcelona Supercomputing Center
· biorxiv
Female reproductive aging is a complex process with profound systemic health implications, yet the molecular and structural dynamics of aging across reproductive organs and tissues remain largely unexplored. Here, we integrate deep learning-based analysis of 1,112 histological im...
Female reproductive aging is a complex process with profound systemic health implications, yet the molecular and structural dynamics of aging across reproductive organs and tissues remain largely unexplored. Here, we integrate deep learning-based analysis of 1,112 histological images with RNA-seq data from 659 samples across seven reproductive organs in 304 female donors aged 20-70 years. We show that female reproductive organs and tissues have asynchronous aging dynamics: while the ovary and vagina age gradually, the uterus undergoes an abrupt transcriptional and cellular transition around the age of menopause. Tissue segmentation highlights that the myometrium in the uterine wall is the most age-affected tissue, marked by extracellular matrix remodeling and immune activation. Across reproductive organs, the epithelial tissue is also strongly affected by age, with the vaginal epithelium showing a unique sharp menopausal transition. Integration via multi-omics factor analysis links these tissue-specific histological transformations to specific molecular shifts, many with nonlinear expression trajectories and enriched in heritable reproductive traits such as pelvic organ prolapse and age at menarche. These findings position menopause as a key inflection point in female aging and provide insights with tissue-specific focus to support healthier menopausal transitions and reduce age-related disease risk.
Longevity Relevance Analysis
(5)
The paper claims that female reproductive organs exhibit asynchronous aging dynamics, particularly highlighting menopause as a key inflection point in female aging. This research is relevant as it explores the molecular and structural dynamics of aging in reproductive organs, which could inform strategies for healthier aging and address age-related health risks in women.
Le Cosquer, G., Pannier, M., Meunier, E. S. ...
· microbiology
· Institute of Digestive Health Research (IRSD), INSERM, Toulouse University, INRAe, ENVT, University Toulouse III Paul Sabatier (UPS), 31300 Toulouse, France
· biorxiv
Pathophysiological mechanisms of unhealthy aging, particularly the transition from robustness to frailty, remain poorly understood. Despite extensive microbiome research on taxonomy, the behavior of early prefrail gut bacteria in their natural community-host mucosal tissue contex...
Pathophysiological mechanisms of unhealthy aging, particularly the transition from robustness to frailty, remain poorly understood. Despite extensive microbiome research on taxonomy, the behavior of early prefrail gut bacteria in their natural community-host mucosal tissue context remains unexplored. Using fecal samples from the INSPIRE-T aging human cohort, we characterized gut microbiota phenotype during prefrailty stages using a polymicrobial biofilm model. Results revealed that prefrail-derived biofilms exhibited distinct taxonomic and physical alterations, enhanced dispersal, and increased epithelial virulence compared to robust counterparts. Multiparametric analyses linked biofilm characteristics to clinical traits, suggesting their potential as aging status indicators. Polyphenol-rich grape pomace extract partially reversed prefrail biofilm alterations and reduced proinflammatory prefrail biofilm responses in vitro. Microbiota from prefrail aged mice induced colon damage in antibiotic-treated recipients, establishing a prefrail microbiome-inflammation causality. Overall, the findings identified novel prefrail microbiome characteristics, established causal inflammatory links, and support microbiota-targeted geroprotective interventions for the prefrail populations.
Longevity Relevance Analysis
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The paper claims that prefrail gut biofilms exhibit distinct characteristics that can serve as indicators of aging status and that interventions can reverse these alterations. This research is relevant as it explores the underlying mechanisms of frailty in aging and suggests microbiota-targeted interventions that could potentially address root causes of unhealthy aging.
Fanju Meng, Jianuo He, Xuebin Zhang ...
· Advanced science (Weinheim, Baden-Wurttemberg, Germany)
· The State Key Laboratory of Membrane Biology, School of Life Sciences, Peking University, Beijing, 100871, China.
· pubmed
Epigenetic alterations are among the prominent drivers of cellular senescence and/or aging, intricately orchestrating gene expression programs during these processes. This study shows that histone lactylation, plays a pivotal role in counteracting senescence and mitigating dysfun...
Epigenetic alterations are among the prominent drivers of cellular senescence and/or aging, intricately orchestrating gene expression programs during these processes. This study shows that histone lactylation, plays a pivotal role in counteracting senescence and mitigating dysfunctions of skeletal muscle in aged mice. Mechanistically, histone lactylation and lactyl-CoA levels markedly decrease during cellular senescence but are restored under hypoxic conditions primarily due to elevated glycolytic activity. The enrichment of histone lactylation at promoters is essential for sustaining the expression of genes involved in the cell cycle and DNA repair pathways. Furthermore, the modulation of enzymes crucial for histone lactylation, leads to reduced histone lactylation and accelerated cellular senescence. Consistently, the suppression of glycolysis and the depletion of histone lactylation are also observed during skeletal muscle aging. Modulating the enzymes can also lead to the loss of histone lactylation in skeletal muscle, downregulating DNA repair and proteostasis pathways and accelerating muscle aging. Running exercise increases histone lactylation, which in turn upregulate key genes in the DNA repair and proteostasis pathways. This study highlights the significant roles of histone lactylation in modulating cellular senescence as well as muscle aging, providing a promising avenue for antiaging intervention via metabolic manipulation.
Longevity Relevance Analysis
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Histone lactylation plays a crucial role in counteracting cellular senescence and mitigating skeletal muscle aging. This study addresses the underlying mechanisms of aging and cellular senescence, focusing on epigenetic modifications that could potentially lead to interventions for age-related decline.
Wang, S., Dong, D., Li, X. ...
· bioinformatics
· CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences
· biorxiv
Complex diseases often exhibit sex-dimorphism in morbidity and prognosis, many of which are age-related. However, the underlying mechanisms of sex-dimorphic aging remain foggy, with limited studies across multiple tissues. We systematically analyzed ~17,000 transcriptomes from 35...
Complex diseases often exhibit sex-dimorphism in morbidity and prognosis, many of which are age-related. However, the underlying mechanisms of sex-dimorphic aging remain foggy, with limited studies across multiple tissues. We systematically analyzed ~17,000 transcriptomes from 35 human tissues to quantitatively evaluate the individual and combined contributions of sex and age to transcriptomic variations. We discovered extensive sex-dimorphisms during aging with distinct patterns of change in gene expression and alternative splicing (AS). Intriguingly, the male-biased age-associated AS events have a stronger association with Alzheimer's disease, and the female-biased events are often regulated by several sex-biased splicing factors that may be controlled by estrogen receptors. Breakpoint analysis showed that sex-dimorphic aging rates are significantly associated with decline of sex hormones, with males having a larger and earlier transcriptome change. Collectively, this study uncovered an essential role of sex during aging at the molecular and multi-tissue levels, providing insight into sex-dimorphic regulatory patterns.
Longevity Relevance Analysis
(5)
The paper claims that sex-dimorphic aging patterns are associated with distinct gene expression changes and alternative splicing events influenced by sex hormones. This research is relevant as it explores the molecular mechanisms underlying aging, specifically how sex differences contribute to aging processes, which could inform strategies for longevity and age-related disease prevention.