Olinger, B., Anerillas, C., Herman, A. B. ...
· epidemiology
· Translational Gerontology Branch, National Institute on Aging, NIH, Baltimore, Maryland, USA
· medrxiv
Cellular senescence increases in frequency with age and is implicated in age-related pathologies, and identifying circulating biomarkers of senescence holds great diagnostic potential. Circulating senescence signatures are predictive of many age-related traits and diseases, thoug...
Cellular senescence increases in frequency with age and is implicated in age-related pathologies, and identifying circulating biomarkers of senescence holds great diagnostic potential. Circulating senescence signatures are predictive of many age-related traits and diseases, though cell type-specific senescence signatures have not been comprehensively explored. In this study, senescence signatures from the Senescence Catalog (SenCat), including 14 human cell types such as peripheral blood mononuclear cells, renal epithelial cells, vascular smooth muscle cells, among others, are examined for their clinical relevance in circulation in two longitudinal studies: 1,275 participants of the Baltimore Longitudinal Study of Aging (BLSA) and 997 participants of the Invecchiare in Chianti (InCHIANTI) study. Notably, pooled senescence proteins outperformed non-senescence proteins in predicting many clinical parameters such as age and hypertension, and in many instances cell type senescence signatures mapped most strongly to their corresponding health domain. Importantly, the immune cell senescence signature is associated with future onset of several diseases such as diabetes. This study demonstrates that circulating cell type-specific biomarkers of senescence can reveal higher resolution health status than previously attained.
Longevity Relevance Analysis
(5)
Circulating cell type-specific biomarkers of senescence can predict health status and disease onset in aging populations. This paper addresses the root causes of aging by exploring cellular senescence and its implications for health, which is central to longevity research.
Simao, E.
· systems biology
· Universidade Federal de Santa Catarina - UFSC
· biorxiv
Background: For decades, computational biology has failed to create unified models where metabolic state and regulatory control are bidirectionally coupled: metabolic models optimize flux but cannot represent dynamic regulation, while regulatory models treat ATP as a fixed parame...
Background: For decades, computational biology has failed to create unified models where metabolic state and regulatory control are bidirectionally coupled: metabolic models optimize flux but cannot represent dynamic regulation, while regulatory models treat ATP as a fixed parameter rather than a dynamic variable affected by pathway activity. This fundamental limitation prevents computational recapitulation of emergent threshold behaviors-spontaneous homeostasis, adaptive reorganization, pathway switching-observed in living organisms. The challenge requires formalisms where (1) metabolic state governs regulatory decisions AND (2) regulatory choices consume metabolic resources, producing emergent dynamics from feedback rather than programming. Methods: We introduce Signal Hierarchical Petri Nets, extending Hybrid Petri Nets with bidirectional metabolic-regulatory coupling through energy-dependent layer organization. Unlike classical approaches, ATP is simultaneously a regulatory signal (governing pathway availability through quantitative thresholds) and a material substrate (consumed by pathway activity). When ATP depletes below 1000 M, high-cost pathways automatically become unavailable; pathway activity consuming ATP creates feedback affecting subsequent pathway accessibility. This bidirectional coupling enables emergent threshold behaviors impossible in classical formalisms. We demonstrate the paradigm through macrocyclic peptide transport across 53 metabolic conditions, where drug accumulation depends on ATP-governed pathway reorganization. Results: The formalism produces three emergent behaviors never achieved in unified metabolic-regulatory models. (1) Spontaneous homeostasis without programming: Despite 113-fold permeability variation from N-methylation, ATP-replete cells maintain constant drug accumulation (CV=0.066%)-homeostatic compensation emerges from ATP-consumption feedback, not explicit control logic. (2) Threshold-triggered reorganization: ATP depletion to 300 M triggers 8533-fold active-to-passive transport shifts with paradoxical 141% accumulation increase from efflux collapse. (3) Tissue-specific dynamics from identical parameters: Tumor hypoxia (ATP=1200 M) versus normal tissue (ATP=5000 M) produces 6.62-fold selectivity differences from differential pathway accessibility-same model, different emergent outcomes. Computational predictions achieve r=0.911 correlation with experimental cyclosporin permeability (n=32). Conclusions: Signal Hierarchical Petri Nets represent the first computational formalism achieving emergent threshold dynamics through bidirectional metabolic-regulatory coupling. The paradigm enables in silico recapitulation of adaptive cellular behaviors previously impossible to model, with applications extending beyond drug transport to any biological system where metabolic state governs regulatory reorganization: cancer metabolism, ischemia, synthetic biology, and aging research.
Longevity Relevance Analysis
(5)
The paper claims to introduce a new computational formalism that enables the modeling of emergent threshold dynamics in metabolic-regulatory systems. This is relevant as it addresses fundamental mechanisms of cellular behavior that could influence aging processes and metabolic regulation in age-related diseases.
Yun Dai, Yican Guo, Dan Chen ...
· Journal of nanobiotechnology
· Department of Obstetrics and Gynecology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, Hubei, China.
· pubmed
Ovarian aging, characterized by declining ovarian reserve, is a pacemaker of aging in the female body. Oxidative stress leads to apoptosis, mitochondrial dysfunction, inflammation, and telomere shortening, accelerating ovarian aging. Scavenging reactive oxygen species (ROS) has b...
Ovarian aging, characterized by declining ovarian reserve, is a pacemaker of aging in the female body. Oxidative stress leads to apoptosis, mitochondrial dysfunction, inflammation, and telomere shortening, accelerating ovarian aging. Scavenging reactive oxygen species (ROS) has been shown to delay ovarian aging; however, there remains a significant lack of antioxidants with both proven efficacy and minimal side effects. DNA tetrahedral nanostructure (DTN) is a promising nucleic acid framework with antioxidant and anti-apoptotic properties. We developed FSH-DTN, a modified nanoparticle equipped with a follicle-stimulating hormone receptor-targeting peptide (FSH33-53) to enhance ovarian accumulation. Compared to native DTN, FSH-DTN showed superior ovarian targeting efficiency as confirmed by in vivo imaging. In both in vivo and in vitro models of acute, subacute, and chronic ovarian aging, FSH-DTN demonstrated superior antioxidant, anti-apoptotic, and anti-aging effects. Further investigation revealed that FSH-DTN can directly eliminate ROS in the ovaries while enhancing ovarian antioxidant capacity by activating the NRF2 signaling pathway, thereby protecting ovarian function. In this study, we offer a new strategy for neutralizing oxidative stress to delay ovarian aging.
Longevity Relevance Analysis
(5)
FSH-DTN can directly eliminate reactive oxygen species in the ovaries while enhancing ovarian antioxidant capacity, thereby protecting ovarian function and delaying ovarian aging. This research addresses the root causes of ovarian aging through oxidative stress elimination, which is a significant aspect of longevity research.
Di Wang, Da Zhong, Yizhe He ...
· Advanced materials (Deerfield Beach, Fla.)
· Department of Rehabilitation Medicine, the Second Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, P. R. China.
· pubmed
Osteoporosis is characterized by impaired bone formation and disrupted bone marrow homeostasis, largely driven by mitochondrial dysfunction in bone marrow mesenchymal stem cells (BMSCs). To address this, a live mitochondrial delivery system composed of CXCR4-engineered macrophage...
Osteoporosis is characterized by impaired bone formation and disrupted bone marrow homeostasis, largely driven by mitochondrial dysfunction in bone marrow mesenchymal stem cells (BMSCs). To address this, a live mitochondrial delivery system composed of CXCR4-engineered macrophages loaded with nanozyme-functionalized mitochondria (CM-MTBM). This system integrates bone-targeted migration, reactive oxygen species scavenging, and communication-mediated mitochondrial transfer. CM-MTBM restores mitochondrial respiration, enhances osteogenic differentiation, and alleviates oxidative apoptosis in BMSCs, thereby promoting metabolic recovery and redox balance. In osteoporotic mice, CM-MTBM treatment markedly improved the trabecular bone microarchitecture and promoted osteogenic repair. Single-cell transcriptomic analysis further revealed the enrichment of osteogenic BMSC subpopulations and functional reprogramming of the bone marrow immune-metabolic microenvironment. Mechanistically, CM-MTBM activated mitochondrial oxidative metabolism while suppressing inflammation and senescence-associated signaling, achieving coordinated metabolic and osteogenic activation. Collectively, this work established a communication-driven mitochondrial transfer paradigm that reframes mitochondrial therapy from passive structural supplementation to communication-driven metabolic reprogramming, establishing a conceptual and technological framework for precision treatment of metabolic bone disorders.
Longevity Relevance Analysis
(5)
The paper claims that CXCR4-engineered macrophages can restore mitochondrial function in bone marrow mesenchymal stem cells, leading to improved bone health in osteoporosis. This research addresses mitochondrial dysfunction, a key factor in aging and age-related diseases, and proposes a novel therapeutic approach that could have implications for longevity and metabolic health.
Anerillas, C., Altes, G., Gresova, K. ...
· molecular biology
· National Institute on Aging, NIH
· biorxiv
There is an urgent need to comprehensively catalog senescence markers across cell types in an organism in order to characterize senotypes and senescent cell heterogeneity. Here, we profiled the transcriptomes and proteomes in 14 different primary human cell types undergoing over ...
There is an urgent need to comprehensively catalog senescence markers across cell types in an organism in order to characterize senotypes and senescent cell heterogeneity. Here, we profiled the transcriptomes and proteomes in 14 different primary human cell types undergoing over 30 senescence paradigms to create a senescence catalog we termed SenCat. We found that, while senescent cells from all primary tissue types did not share a single unique marker, they did activate shared specific metabolic and damage-response pathways implicated in tissue repair. Machine learning analysis of the SenCat transcriptomic and proteomic datasets successfully identified independent sets of senescent human cells, and senescent-like cells in mouse lung and kidney. In sum, SenCat represents a much-needed resource to identify senescent cells across tissues in the body.
Longevity Relevance Analysis
(5)
The paper claims to create a comprehensive catalog of senescence markers across various human cell types. This research is relevant as it addresses the root causes of aging by characterizing senescence, which is a significant contributor to age-related decline and diseases.
Guo, K., Wang, Z., Gill, J. S. ...
· immunology
· Department of Geriatrics, School of Medicine and Health Sciences, University of North Dakota
· biorxiv
Foxp3+ regulatory T cells (Tregs) maintain immune homeostasis, yet the process that preserves their stability during aging remain unclear. Mechanistic progress has been hindered by models that ablate Tregs or delete Foxp3, which induce acute autoimmunity and prevent longitudinal ...
Foxp3+ regulatory T cells (Tregs) maintain immune homeostasis, yet the process that preserves their stability during aging remain unclear. Mechanistic progress has been hindered by models that ablate Tregs or delete Foxp3, which induce acute autoimmunity and prevent longitudinal study of physiological regulatory drift. Here, we establish a dose-dependent mitochondrial framework that preserves Treg lineage survival while permitting gradual metabolic attenuation. Using Treg-restricted TFAM modulation, a complementary haploinsufficient model, and whole-spleen single-cell profiling. We identify lineage-selective immune remodeling characterized by contraction of naive CD8+ and follicular B-cell pools, alteration of CD4+ states, expansion of activated Tregs, and emergence of neuroimmune stress linked transcriptional modules that parallel physiological aging. Mechanistically, mitochondrial insufficiency is associated with functional loss of FOXP3 centered chromatin coordination and enrichment of NF-kB/NFAT/AP-1 inflammatory and senescence programs while lineage identity remains detectable. Partial mitochondrial attenuation within Tregs alone is sufficient to drive chronic low-grade systemic inflammation, neuromuscular decline, gut microbial restructuring, and elevated microglial responsiveness without Treg depletion. Pharmacologic and microbiota-directed interventions partially reduce inflammatory tone and improve functional metrics. Together, our findings identify TFAM as a key regulator of immune aging and reveal that healthy mitochondrial function in Tregs is essential for protecting against inflammaging and age-associated functional decline.
Longevity Relevance Analysis
(5)
The paper claims that TFAM modulation in regulatory T cells is crucial for maintaining mitochondrial integrity, which in turn protects against inflammaging and age-associated functional decline. This research addresses the mechanisms underlying immune aging and suggests potential interventions to mitigate age-related decline, making it relevant to the root causes of aging.
Philp, A. R., Villeda, S., Remesal, L. ...
· neuroscience
· University of California San Francisco
· biorxiv
Efforts to rejuvenate age-related cognitive decline have predominantly targeted neurons, often overlooking non-neuronal cell types in the aging brain. Here, we show that countering alterations in oligodendrocyte-derived extracellular matrix (ECM) in the aging hippocampus restores...
Efforts to rejuvenate age-related cognitive decline have predominantly targeted neurons, often overlooking non-neuronal cell types in the aging brain. Here, we show that countering alterations in oligodendrocyte-derived extracellular matrix (ECM) in the aging hippocampus restores cognition. We identify broad age-associated transcriptional and proteomic changes in oligodendrocytes, including dysregulation of the matrisome, with marked upregulation of ECM components and associated regulators with age. Among these, we detect an increase in Hyaluronan and proteoglycan link protein 2 (HAPLN2), an oligodendrocyte-derived core matrisome protein that locates specifically at the nodes of Ranvier, in the hippocampus of aged mice and older humans. Hapln2 overexpression in oligodendrocytes of young mice recapitulated age-related memory impairments. Conversely, abrogating the age-related increase in Hapln2 induced synaptic plasticity-related hippocampal transcriptional signatures and improved memory in aged mice. Together, these data define oligodendrocyte-derived ECM remodeling as a hallmark of brain aging that can be targeted to rescue cognitive decline.
Longevity Relevance Analysis
(5)
Countering age-associated alterations in oligodendrocyte-derived extracellular matrix can restore cognitive function in aging. This paper addresses a root cause of cognitive decline associated with aging by focusing on oligodendrocyte-derived ECM remodeling, which is a novel approach in longevity research.
Shuang Wei, Lei Zhang, Xuan-Ren Wang ...
· Inflammation
· Department of Cardiology, Beijing Anzhen Hospital, Capital Medical University, Beijing, 100029, China.
· pubmed
The gradual decline of endothelial function and the intensification of inflammatory responses form the basis for the occurrence and development of age-related diseases such as atherosclerosis (AS). Mitochondrial dysfunction-manifested by excessive reactive oxygen species (ROS) pr...
The gradual decline of endothelial function and the intensification of inflammatory responses form the basis for the occurrence and development of age-related diseases such as atherosclerosis (AS). Mitochondrial dysfunction-manifested by excessive reactive oxygen species (ROS) production, reduced mitochondrial membrane potential, and impaired mitophagic flux-and sterile inflammation are hallmarks of aged vasculature. We investigated whether bolstering mitochondrial quality control via the novel cell-penetrating antioxidant PEP-1-Catalase (CAT) could mitigate these key features of vascular aging. To model age-associated vascular pathology, ApoE⁻/⁻ mice were fed a high-fat diet (HFD) and treated with PEP-1-CAT. Endothelial cell function, plaque burden, and inflammation were analyzed. In vitro, human endothelial cells (HUVECs) were subjected to inflammatory stress and treated with PEP-1-CAT, with or without modulators of mitophagy. We assessed mitochondrial ROS, membrane potential, NOD-like receptor protein 3 (NLRP3) inflammasome activation, and the PINK1-Parkin pathway. PEP-1-CAT treatment significantly ameliorated atherogenesis and improved features of plaque stability in mice. It suppressed vascular oxidative stress, restored mitochondrial membrane potential, enhanced mitophagic flux, and inhibited NLRP3-driven inflammation. In endothelial cells, PEP-1-CAT attenuated mitochondrial oxidative stress and dysfunction. Crucially, it activated the PINK1-Parkin pathway to promote mitophagy, which was essential for its anti-inflammatory effects, as mitophagy inhibition abrogated the suppression of the NLRP3 inflammasome. Our findings demonstrate that targeting mitochondrial health with PEP-1-CAT alleviates hallmarks of atherosclerotic vascular pathology, including endothelial dysfunction and inflammation, by enhancing mitophagy. This strategy of restoring mitochondrial quality control presents a promising therapeutic approach to delay atherosclerotic vascular pathology.
Longevity Relevance Analysis
(5)
The paper claims that enhancing mitophagy with PEP-1-CAT can alleviate atherosclerotic vascular pathology by improving mitochondrial health and reducing inflammation. This research addresses the underlying mechanisms of vascular aging and proposes a therapeutic approach that targets mitochondrial dysfunction, which is a significant contributor to age-related diseases.
Burnaevskiy, N., Kelly, C., Wangadi, J. ...
· cell biology
· Altius Institute for Biomedical Sciences
· biorxiv
Aging is associated with progressive changes of cellular functional states, but whether these changes arise from novel programs or from distortion of normal developmental trajectories often remains unclear. Here, we investigate this question in the context of human immune aging b...
Aging is associated with progressive changes of cellular functional states, but whether these changes arise from novel programs or from distortion of normal developmental trajectories often remains unclear. Here, we investigate this question in the context of human immune aging by analyzing age-associated changes in CD4 T cells at single-cell resolution. We show that CD4 T cell subsets accumulate senescence-associated features at different rates and that the naive CD4 T cell compartment is highly heterogeneous with respect to senescence markers. Strikingly, transcriptional changes associated with aging of naive CD4 T cells parallel those observed during normal post-thymic maturation from recent thymic emigrants (RTE) to mature naive cells. This similarity defines a transcriptional aging trajectory that we term overmaturation, characterized by exaggerated execution of a physiological maturation program. This overmaturation is consequential for T cell function, as we demonstrate through perturbation of transcription factor TOX, which is predominantly expressed in RTE and whose expression decreases with age. Together, our findings identify transcriptional overmaturation as a major trajectory of naive CD4 T cell aging and suggest that aging-associated distortion of developmental programs can strongly contribute to immunosenescence.
Longevity Relevance Analysis
(5)
The paper identifies transcriptional overmaturation as a major trajectory of naive CD4 T cell aging. This research is relevant as it explores the underlying mechanisms of immune aging, which can contribute to understanding and potentially mitigating the root causes of aging and age-related diseases.
Jing Zhang, Xinghua Li, Ping Wang ...
· ACS nano
· Department of Pharmacy, Zhongda Hospital, School of Medicine, Southeast University, Nanjing, Jiangsu 210009, China.
· pubmed
Osteoarthritis (OA), a leading cause of disability worldwide, impacts over 300 million people through progressive joint degeneration marked by chronic pain and functional impairment. A key driver of osteoarthritis progression is synovitis, characterized by inflamed synovial tissu...
Osteoarthritis (OA), a leading cause of disability worldwide, impacts over 300 million people through progressive joint degeneration marked by chronic pain and functional impairment. A key driver of osteoarthritis progression is synovitis, characterized by inflamed synovial tissue harboring senescent fibroblasts and pro-inflammatory macrophages. These senescent cells secrete senescence-associated secretory phenotype (SASP) components, includining cytokines and proteases, which drive macrophage polarization toward a pro-inflammatory M1 state. Simultaneously, M1 macrophages release reactive oxygen species (ROS) and inflammatory mediators, amplifying cellular senescence and establishing a pathological feedback loop. Unfortunately, conventional single-target therapies, such as senolytics or macrophage modulators, fail to address this interdependence vicious cycle. Herein, guided by bioinformatics analysis integrated with clinical and murine specimen data, we developed an easy-to-produce combinatorial nanomedicine platform comprising: (i) synovium-targeting liposomes delivering senolytics to clear senescent fibroblasts and suppress SASP, and (ii) M2 macrophage-derived exosomes to convert M1 macrophages into regenerative M2 phenotypes. In rat OA models, this dual approach combined disrupted the senescence-inflammation cascade, achieving 73.53% synovitis index reduction and 75.00% OARSI score reduction. In summary, by concurrently clearing SASP-producing senescent cells and pro-inflammatory M1 macrophages, our strategy restores joint homeostasis and presents a translatable framework for treating age-related inflammatory disorders.
Longevity Relevance Analysis
(5)
The paper claims that a dual nanomedicine approach can disrupt the senescence-associated secretory phenotype and restore joint homeostasis in osteoarthritis. This research addresses the underlying mechanisms of cellular senescence and inflammation, which are key contributors to aging and age-related diseases.
Christian Gallrein, David H Meyer, Yvonne Woitzat ...
· Nature aging
· Institute for Genome Stability in Aging and Disease, Medical Faculty, University and University Hospital of Cologne, Cologne, Germany. christian.gallrein@leibniz-fli.de.
· pubmed
Different neuron types show distinct susceptibility to age-dependent degeneration, yet the underlying mechanisms are poorly understood. Here we applied aging clocks to single neuron types in Caenorhabditis elegans and found that distinct neurons differ in their biological age. Ci...
Different neuron types show distinct susceptibility to age-dependent degeneration, yet the underlying mechanisms are poorly understood. Here we applied aging clocks to single neuron types in Caenorhabditis elegans and found that distinct neurons differ in their biological age. Ciliated sensory neurons with high neuropeptide and protein biosynthesis gene expression show accelerated aging and degeneration, correlating with loss of function, which could be prevented by pharmacological inhibition of translation. We show that the C. elegans neuronal aging transcriptomes correlate with human brain aging patterns and anticorrelate with geroprotective interventions. We performed an in silico drug screen to identify potentially neuroprotective small molecules. We show that the natural occurring plant metabolite syringic acid and the piperazine derivative vanoxerine delay neuronal degeneration, and propose these compounds as neuroprotective interventions. Furthermore, we identify neurotoxins that accelerate neurodegeneration, indicating that distinguishing aging trajectories between neuron types can inform on protective interventions as well as risk factors.
Longevity Relevance Analysis
(5)
The paper claims that distinct neuron types in C. elegans exhibit different aging trajectories, which can be influenced by pharmacological interventions. This research is relevant as it explores the biological mechanisms of aging at the neuronal level and identifies potential neuroprotective strategies, contributing to the understanding of aging and age-related neurodegeneration.
Xinyi Wang, Hong Fu, Qingyang Sun ...
· Cell research
· GMU-GIBH Joint School of Life Sciences, The Guangdong-Hong Kong-Macao Joint Laboratory for Cell Fate Regulation and Diseases, Guangzhou Medical University, Guangzhou, Guangdong, China.
· pubmed
A fundamental question in biology is whether all cells age. Embryonic stem cells (ESCs) defy the norm as rare normal cells capable of indefinite in vitro passage. However, the mechanisms underlying ESC lineage immortality remain unresolved. Using long-term live-cell imaging to fo...
A fundamental question in biology is whether all cells age. Embryonic stem cells (ESCs) defy the norm as rare normal cells capable of indefinite in vitro passage. However, the mechanisms underlying ESC lineage immortality remain unresolved. Using long-term live-cell imaging to follow the fates of single ESCs, we show that ESC lineage renewal is achieved through sporadic entry into a state characterized by the expression of two-cell embryo-specific markers. During this state, cells undergo asymmetric fate divisions, enriching accumulated DNA damage into one daughter lineage that is destined for elimination, while producing a second lineage that reverts to the pluripotent state. Importantly, the latter lineage exhibits signs of rejuvenation, including reduced DNA damage and enhanced chimeric efficiency. These findings underscore the crucial role of asymmetric cell division in maintaining the long-term health of the ESC lineage against mounting damage within individual cells and provide a potential model for studying cellular aging and rejuvenation in mammalian cells.
Longevity Relevance Analysis
(5)
The paper claims that asymmetric cell division in embryonic stem cells leads to rejuvenation by segregating DNA damage into one daughter cell while maintaining pluripotency in the other. This research is relevant as it explores mechanisms that could potentially address the root causes of cellular aging and rejuvenation, contributing to our understanding of longevity.
Cellular aging is characterized by progressive changes in gene expression that contribute to tissue dysfunction; however, identifying genes that regulate the aging process, rather than merely serve as biomarkers, remains a significant challenge. Here we present PRISM (Pseudotime ...
Cellular aging is characterized by progressive changes in gene expression that contribute to tissue dysfunction; however, identifying genes that regulate the aging process, rather than merely serve as biomarkers, remains a significant challenge. Here we present PRISM (Pseudotime Reversion via In Silico Modeling), a computational pipeline that integrates pseudotime trajectory analysis with Boolean network analysis to identify cellular rejuvenation targets from single-cell RNA sequencing data. We applied PRISM to a published dataset of human skin comprising 47,060 cells from nine donors aged 18 to 76 years. Analysis of keratinocytes revealed two distinct aging trajectories with fundamentally different regulatory architectures. One trajectory (labeled Y_272) exhibited "aging as convergence," where cells were driven toward a single dominant aged attractor (aging score +2.181). A second trajectory (labeled Y_308) exhibited "aging as departure," where cells escaped from a dominant youthful attractor basin (aging score -0.536). Systematic perturbation analysis revealed a critical distinction between genes exhibiting age-related expression changes (phenotypic markers) and genes controlling attractor landscape architecture (regulatory controllers). Switch genes marking the aging trajectories proved largely ineffective as intervention targets, while master regulators operating at higher levels of the regulatory hierarchy produced substantial rejuvenation effects. BACH2 knockdown was identified as the dominant intervention for Y_272, shifting the aging score by {Delta}=-3.746 (98.9% improvement). ASCL2 knockdown was identified as the top target for Y_308, with synergistic enhancement observed through combinatorial perturbation with ATF6. These findings demonstrate that attractor-based analysis identifies different and potentially superior therapeutic targets compared to expression-based approaches and provide specific hypotheses for experimental validation of cellular rejuvenation strategies in human skin.
Longevity Relevance Analysis
(5)
The paper claims that attractor landscape analysis can identify distinct cellular rejuvenation targets in aging keratinocytes. This research is relevant as it addresses the underlying mechanisms of aging and proposes specific interventions aimed at rejuvenating aged cells, rather than merely treating age-related symptoms.
Eric K F Donahue, Nathaniel L Hepowit, Elizabeth M Ruark ...
· Nature cell biology
· Department of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, TN, USA.
· pubmed
The endoplasmic reticulum (ER) comprises an array of subdomains, each defined by a characteristic structure and function. Although altered ER processes are linked to age-onset pathogenesis, it is unclear whether shifts in ER structure or dynamics underlie these functional changes...
The endoplasmic reticulum (ER) comprises an array of subdomains, each defined by a characteristic structure and function. Although altered ER processes are linked to age-onset pathogenesis, it is unclear whether shifts in ER structure or dynamics underlie these functional changes. Here we establish ER structural and functional remodelling as a conserved feature of ageing across yeast, Caenorhabditis elegans and mammals. Focusing on C. elegans as the exemplar of metazoan ageing, we reveal striking age-related reductions in ER volume across diverse tissues and a morphological shift from rough sheets to tubular ER. This morphological transition corresponds with large-scale shifts in ER proteome composition from protein synthesis to lipid metabolism, a phenomenon conserved in mammalian tissues. We show that Atg8 and ULK1-dependent ER-phagy drives age-associated ER remodelling through tissue-specific factors, including the previously uncharacterized ER-phagy regulator TMEM-131 and the IRE-1-XBP-1 branch of the unfolded protein response. Providing support for a model where ER remodelling is adaptive, diverse lifespan-extending paradigms downscale and remodel ER morphology throughout life. Furthermore, mTOR-dependent lifespan extension in yeast and worms requires ER-phagy, indicating that ER remodelling is a proactive and protective response during ageing. These results reveal ER-phagy and ER dynamics as pronounced, underappreciated mechanisms of both normal ageing and age-delaying interventions.
Longevity Relevance Analysis
(5)
The paper claims that ER remodelling driven by ER-phagy is a conserved feature of ageing that can influence lifespan extension. This research is relevant as it addresses mechanisms underlying the ageing process and potential interventions that could mitigate age-related decline.
Peng X Chen, Leyuan Zhang, Xueying Wu ...
· Nature metabolism
· Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
· pubmed
The nuclear envelope (NE) is essential for cellular homeostasis, yet its integrity declines with age, accelerating functional deterioration. Here we report a mitochondria-to-NE signalling pathway that safeguards NE integrity through redox-dependent lipid metabolism. In Caenorhabd...
The nuclear envelope (NE) is essential for cellular homeostasis, yet its integrity declines with age, accelerating functional deterioration. Here we report a mitochondria-to-NE signalling pathway that safeguards NE integrity through redox-dependent lipid metabolism. In Caenorhabditis elegans, reducing mitochondrial ETC activity preserves NE morphology during ageing. This effect requires developmental mitochondrial superoxide, which downregulates SBP-1 (SREBP orthologue) and suppresses unsaturated fatty acid biosynthesis. The resulting reduction in unsaturated fatty acid levels limits lipid peroxidation, thereby preserving NE structure. Interventions targeting lipid peroxidation preserve NE integrity, extend lifespan in worms and ameliorate senescence-associated phenotypes in human fibroblasts and monkey cells mimicking Hutchinson-Gilford progeria syndrome disease. Our findings reveal a previously unrecognized role for mitochondrial superoxide as a protective developmental signal that programs long-term NE integrity. This work establishes lipid peroxidation control as a conserved strategy to delay nuclear ageing and highlights redox-lipid cross-talk as a therapeutic axis for healthy ageing.
Longevity Relevance Analysis
(5)
Mitochondrial superoxide regulates nuclear envelope integrity through redox-mediated lipid metabolism, which can delay nuclear ageing. The study addresses a mechanism that contributes to the aging process by preserving nuclear envelope integrity, thus providing insights into potential interventions for healthy aging.
Kai Li, Trunee Hsu, Hitoshi Uchida ...
· JCI insight
· The ADA Forsyth Institute, Somerville, United States of America.
· pubmed
Mutations in LMNA, encoding nuclear lamina protein Lamin A/C, cause premature aging disorders, most notably Hutchinson-Gilford Progeria Syndrome. Despite obvious skull abnormalities in progeroid patients, the disease-causing mechanism remains elusive. The L648R single amino acid ...
Mutations in LMNA, encoding nuclear lamina protein Lamin A/C, cause premature aging disorders, most notably Hutchinson-Gilford Progeria Syndrome. Despite obvious skull abnormalities in progeroid patients, the disease-causing mechanism remains elusive. The L648R single amino acid substitution blocks prelamin A maturation in mice, modeling a unique human patient. Here, we describe skull deformities in premature aging caused by aberrant suture fusion resembling those of patients with craniosynostosis. Further examinations identify prelamin A accumulation causatively linked to multiple suture synostoses in low bone density. This etiology is distinct from conventional suture fusion mediated by excessive ossification. In addition, the mutation disrupts skeletal stem cell stemness and subsequent stem cell-mediated proliferation and differentiation in osteogenesis. Intrasutural bones present in progeroid patients are highly reminiscent of synostosis caused by stem cell exhaustion. Comparative gene expression profiling further reveals cytoskeletal dynamics associated with skeletogenic cell aging and suture patency in mice and humans. Functional studies demonstrate that abnormal structures of progeric nuclei caused by prelamin A accumulation affect cytoskeleton organization and nucleoskeleton assembly essential for craniofacial skeletogenesis. Pharmacogenetic analyses indicate alleviation of osteogenic defects via actin polymerization. Our findings provide compelling evidence for nuclear and cytoskeletal defects, mediating stem cell-associated osteogenic deformities in progeroid disorders.
Longevity Relevance Analysis
(5)
The paper claims that prelamin A accumulation leads to craniofacial deformities through stem cell-associated osteogenic deficiencies. This research addresses the underlying mechanisms of aging-related deformities, linking cellular aging processes to structural abnormalities, which is pertinent to understanding and potentially mitigating aspects of aging.