Guo, L., Zheng, R., Zhan, Q. ...
· immunology
· china medical university
· biorxiv
The causal link between the aging microenvironment and T cell aging remains elusive. Here, we demonstrate that adenosine within aging tissues actively reprograms CD8+ T cells into a pro-aging Granzyme K+ (Gzmk+) population. Mechanistically, senescent cells create an adenosine-ric...
The causal link between the aging microenvironment and T cell aging remains elusive. Here, we demonstrate that adenosine within aging tissues actively reprograms CD8+ T cells into a pro-aging Granzyme K+ (Gzmk+) population. Mechanistically, senescent cells create an adenosine-rich niche via p16-dependent CD39 upregulation, triggering A2aR signaling to induce Gzmk+ T cell differentiation. Once released, Gzmk promotes systemic inflammaging through PAR1 and complement activation. Crucially, targeting this axis-either via genetic Gzmk ablation or pharmacological A2aR blockade-reverses multi-organ aging phenotypes and significantly extends healthy lifespan in mice. Human analysis reveals age-dependent Gzmk+ T cell accumulation in multi organs, while coffee intake (an A2aR antagonist) inversely correlates with plasma Gzmk levels. Our findings uncover how metabolic niche changes drive T cell aging and establish the adenosine-Gzmk axis as a pivotal therapeutic target for combating age-related diseases.
Longevity Relevance Analysis
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The paper claims that targeting the adenosine-Gzmk axis can reverse multi-organ aging phenotypes and extend healthy lifespan in mice. This research addresses the mechanisms of T cell aging and proposes a therapeutic target for age-related diseases, which is central to longevity research.
Jun Yong Oh, Jae-Byoung Chae, Hyo Kyung Lee ...
· Nature communications
· Department of Chemistry, Ulsan National Institute of Science and Technology (UNIST), Ulsan, Republic of Korea.
· pubmed
Senescent cells contribute to degenerative processes in multiple tissues, including the retina. In the retinal pigment epithelium (RPE), their accumulation is closely associated with retinal aging and disease progression. Eliminating senescent RPE cells has shown therapeutic pote...
Senescent cells contribute to degenerative processes in multiple tissues, including the retina. In the retinal pigment epithelium (RPE), their accumulation is closely associated with retinal aging and disease progression. Eliminating senescent RPE cells has shown therapeutic potential, but conventional senolytics often lack the specificity required to spare non-senescent cells, raising safety concerns. To overcome this, we performed integrated transcriptomic analyses of male mouse-derived RPE cells under natural aging and chemically induced senescence conditions. These analyses identified Bst2 as a membrane-localized marker selectively upregulated in senescent RPE cells, with minimal expression in young controls. Based on this discovery, we developed a modular, antibody-pluggable drug delivery platform-B-Z-PON-comprising mesoporous silica nanoparticles functionalized with a recombinant Fc-binding domain and conjugated with anti-Bst2 antibodies. This nanocarrier selectively accumulates in Bst2-expressing senescent RPE cells, enabling targeted drug delivery and sparing healthy retinal cells. In vivo administration of ABT-263-loaded B-Z-PON in aged and senescence-induced retinal degeneration models resulted in the selective ablation of senescent cells, restoration of RPE function, and improved visual outcomes. Together, our study integrates senescence-specific marker discovery with precision nanomedicine, establishing a versatile platform for targeted senotherapy. These findings offer a promising therapeutic approach for retinal aging disorders, such as age-related macular degeneration.
Longevity Relevance Analysis
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The paper claims that targeting Bst2 in senescent retinal pigment epithelial cells can restore visual function by selectively eliminating these cells. This research addresses the accumulation of senescent cells, which is a root cause of aging-related degeneration in the retina, thus contributing to the understanding and potential treatment of age-related diseases.
Luis Ma Oliveira, Mark Frasier, Samantha J Hutten
· Journal of Parkinson's disease
· The Michael J. Fox Foundation for Parkinson's Research, New York, USA.
· pubmed
The alpha-synuclein seed amplification assay in cerebrospinal fluid is the first validated molecular measurement of alpha-synuclein biology in a living person. The SAA test is transforming our understanding of aging and neurodegenerative diseases by detecting abnormal synuclein b...
The alpha-synuclein seed amplification assay in cerebrospinal fluid is the first validated molecular measurement of alpha-synuclein biology in a living person. The SAA test is transforming our understanding of aging and neurodegenerative diseases by detecting abnormal synuclein biology, and data suggests SAA positivity can occur across Parkinson's disease, Alzheimer's disease, and Dementia with Lewy Bodies. To accelerate development of this important research tool, the Michael J. Fox Foundation proactively funded a community of researchers to work both independently and collaboratively, leading to rapid and iterative progress and validation. The collective validation of the assay across industry and academic groups culminated in a Food and Drug Administration Letter of Support for the test in clinical trials for PD. This article describes the principles that accelerated the development of the assay including patient engagement, collaboration, a commitment to open science through data, sample, and knowledge sharing, and showcases how an international community of experts rallied together towards a common goal.
Longevity Relevance Analysis
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The paper claims that the α-synuclein seed amplification assay can detect abnormal synuclein biology in living individuals, which may advance understanding of neurodegenerative diseases. This research is relevant as it addresses biomarkers that could potentially lead to interventions targeting the underlying mechanisms of aging and neurodegeneration.
Rui Ma, Liyuan Ran, Jinyang Geng ...
· Diabetes, obesity & metabolism
· Institute for Genome Engineered Animal Models of Human Diseases, National Center of Genetically Engineered Animal Models for International Research, Liaoning Province Key Lab of Genetically Engineered Animal Models, Dalian Medical University, Dalian, China.
· pubmed
Global growth hormone receptor knockout (GHR
Global growth hormone receptor knockout (GHR
Longevity Relevance Analysis
(5)
The paper claims that adipose-specific GHR knockout leads to anti-aging benefits through tissue remodeling and improved metabolic flexibility. This research addresses mechanisms that could potentially mitigate aging processes rather than merely treating age-related diseases.
Oberg, M., Maric, I. P., Stromberg, A. ...
· immunology
· Wenner-Gren Institute, Stockholm University; Institute of Medical Microbiology and Hygiene, Medical Center - University of Freiburg, Germany
· biorxiv
All animals age. However, aging is a heterogeneous process, and individual organisms age differently. Moreover, within the same organism, cells or organs do not age at the same time or speed. For instance, although neurodegeneration is a key trait of aging, neurological symptoms ...
All animals age. However, aging is a heterogeneous process, and individual organisms age differently. Moreover, within the same organism, cells or organs do not age at the same time or speed. For instance, although neurodegeneration is a key trait of aging, neurological symptoms normally manifest long after multiple indicators of aging in peripheral tissues. The genetic determinants of aging remain poorly understood. Mutations in leucine-rich repeat kinase 2 (LRRK2) are major genetic risk factors for Parkinson disease (PD). By analyzing PD patients and mice with an LRRK2 gain-of-function mutation (LRRK2GoF), we demonstrate that PD is an accelerated aging disease characterized by systemic low-grade STING-dependent inflammation (inflammaging) that first manifests in the periphery, then disrupts the blood-brain barrier and progresses to the brain, resulting in neurodegeneration. Mechanistically, we demonstrate that a primary consequence of aging or Lrrk2GoF is endolysosomal decline. This results in the cytosolic build-up of extraneous self-DNA and subsequent shedding of DNA-containing extracellular vesicles, thereby triggering the cGAS-STING pathway cell-intrinsically and intercellularly in distant host cells. This study unveils the cGAS-STING pathway and LRRK2GoF as key determinants and potential targets for preventive or therapeutic strategies against accelerated aging, inflammaging, and neurodegeneration.
Longevity Relevance Analysis
(5)
The paper claims that aging-associated endo-lysosomal dysfunction drives inflammaging and neurodegeneration through the STING-IFN-I axis. This research addresses the underlying mechanisms of aging and neurodegeneration, focusing on the cGAS-STING pathway and its implications for potential therapeutic strategies, which are central to longevity research.
Bailiang Jian, Jiazhen Pan, Yitong Li ...
· IEEE transactions on medical imaging
· Not available
· pubmed
Longitudinal brain analysis is essential for understanding healthy aging and identifying pathological deviations. Longitudinal registration of sequential brain MRI underpins such analyses. However, existing methods are limited by reliance on densely sampled time series, a trade-o...
Longitudinal brain analysis is essential for understanding healthy aging and identifying pathological deviations. Longitudinal registration of sequential brain MRI underpins such analyses. However, existing methods are limited by reliance on densely sampled time series, a trade-off between accuracy and temporal smoothness, and an inability to prospectively forecast future brain states. To overcome these challenges, we introduce TimeFlow, a learning-based framework for longitudinal brain MRI registration. TimeFlow uses a U-Net backbone with temporal conditioning to model neuroanatomy as a continuous function of age. Given only two scans from an individual, TimeFlow estimates accurate and temporally coherent deformation fields, enabling non-linear extrapolation to predict future brain states. This is achieved by our proposed inter-/extrapolation consistency constraints applied to both the deformation fields and deformed images. Remarkably, these constraints preserve temporal consistency and continuity without requiring explicit smoothness regularizers or densely sampled sequential data. Extensive experiments demonstrate that TimeFlow outperforms state-of-the-art methods in terms of both future timepoint forecasting and registration accuracy. Moreover, TimeFlow supports novel biological brain aging analyses by differentiating neurode-generative trajectories from normal aging without requiring segmentation, thereby eliminating the need for labor-intensive annotations and mitigating segmentation inconsistency. TimeFlow offers an accurate, data-efficient, and annotation-free framework for longitudinal analysis of brain aging and chronic diseases, capable of forecasting brain changes beyond the observed study period.
Longevity Relevance Analysis
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TimeFlow provides a framework for accurately predicting future brain states and analyzing neurodegenerative trajectories in aging. The paper is relevant as it addresses the mechanisms of brain aging and offers a novel approach to understanding and potentially mitigating age-related changes in neuroanatomy.
Cepeda, C. J.
· molecular biology
· Forward Thinking Communities Inc
· biorxiv
Biological aging is increasingly understood as a process of reversible epigenetic regulatory drift rather than irreversible structural deterioration. The Genesis Framework proposes a systems-control architecture for safe partial cellular rejuvenation, grounded in four interdepend...
Biological aging is increasingly understood as a process of reversible epigenetic regulatory drift rather than irreversible structural deterioration. The Genesis Framework proposes a systems-control architecture for safe partial cellular rejuvenation, grounded in four interdependent regulatory principles: stoichiometric transcriptional control of OCT4, SOX2, and KLF4 at a 3:2:1 molar ratio to promote chromatin remodeling without pluripotency induction; transient self-amplifying RNA delivery via 72-hour pulse using non-integrating saRNA; a microRNA-based dual-gate safety architecture utilizing the Let-7 and miR-294 axis within the 3' UTR to ensure biological activity exclusively in mature somatic cells; and tissue-network coordination through GDF11 and TIMP2 paracrine signaling. Delivery is proposed via selective organ targeting SORT lipid nanoparticles incorporating DOTAP at 5 mol% with m1-Psi-modified saRNA for nuclease resistance. All framework parameters emerged from 21,000 dual-validation simulation cycles concurrently testing efficacy and safety using BioNetGen, Python, and AlphaFold 3 integrated with Human Cell Atlas stochastic noise parameters. Experimental validation is outlined using human dermal fibroblasts as a primary model with falsifiable predictions anchored to Horvath DNA methylation clock reversal and NANOG suppression as primary endpoints. This document is a theoretical framework and complete laboratory blueprint released under CC0 for unrestricted scientific replication by independent biological laboratories worldwide.
Longevity Relevance Analysis
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The paper proposes a systems-control architecture for safe partial cellular rejuvenation through targeted molecular interventions. This research addresses the underlying mechanisms of biological aging and aims to develop strategies for rejuvenation, which is directly relevant to longevity and age-related diseases.
Eames, A., Glubokov, D., Moldakozhayev, A. ...
· radiology and imaging
· Brigham and Women's Hospital, Harvard Medical School
· medrxiv
While aging manifests differently across organs and individuals, existing approaches to measure it lack the spatial resolution to capture this complexity. Here, we develop an approach that applies multi-modal imaging, segmentation algorithms, and deep-learning to assess organ-spe...
While aging manifests differently across organs and individuals, existing approaches to measure it lack the spatial resolution to capture this complexity. Here, we develop an approach that applies multi-modal imaging, segmentation algorithms, and deep-learning to assess organ-specific aging across 39 anatomical regions in a total of 134K individuals in the UK Biobank. Our analysis reveals significant organ aging heterogeneity across and within individuals and a remarkable prevalence of organ-specific extreme aging. We validate that our imaging measures capture pathophysiologically meaningful aging through correlation with organ-specific biomarkers, revealing biologically coherent patterns. We find that accelerated organ aging is robustly predictive of corresponding organ disease. We identify the cerebrum as one of the strongest predictors of organismal aging. We investigate organ aging patterns underlying disease risk and find that each disease is linked to aging of highly distinct subsets of organs. Exploring lifestyle factors and interventions reveals a range of divergent organ-specific effects. Our work establishes a powerful paradigm for noninvasively evaluating human aging at anatomical resolution and population scale.
Longevity Relevance Analysis
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The paper claims that accelerated organ aging is predictive of corresponding organ disease and reveals distinct organ-specific aging patterns linked to disease risk. This research is relevant as it addresses the complexity of aging at an anatomical level and explores the underlying mechanisms of aging, which could contribute to understanding and potentially mitigating age-related diseases.
Prisca Berardi, Veronica Martinez-Fernandez, Anaïs Rat ...
· Nature communications
· Sorbonne Université, CNRS, Laboratoire de Biologie Moléculaire et Cellulaire des Eucaryotes, LBMCE, Paris, France.
· pubmed
In the absence of telomerase, telomere shortening triggers replicative senescence, a tumor suppressor mechanism that is also associated with oncogenic genomic instability. Yet, the precise mechanism that connects these seemingly opposing forces remains poorly understood. To direc...
In the absence of telomerase, telomere shortening triggers replicative senescence, a tumor suppressor mechanism that is also associated with oncogenic genomic instability. Yet, the precise mechanism that connects these seemingly opposing forces remains poorly understood. To directly study the complex interplay between senescence, telomere dynamics, and genomic instability, we develop a system in Saccharomyces cerevisiae to generate and track telomeres of precise length in the absence of telomerase. Using single-telomere and single-cell analyses combined with mathematical modeling, we identify a threshold length at which telomeres switch into dysfunction. A single shortest telomere below the threshold length is necessary and sufficient to trigger the onset of replicative senescence in a majority of cells. At population level, fluctuation assays establish that rare genomic instability arises predominantly in cis to the shortest telomere as Pol32-dependent non-reciprocal translocations that result in re-elongation of the shortest telomere and likely transient escape from senescence. The switch of the shortest telomere into dysfunction and subsequent processing in telomerase-negative cells thus serves as the mechanistic link between replicative senescence onset, genomic instability and the initiation of post-senescence survival.
Longevity Relevance Analysis
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A single shortest telomere below a critical threshold triggers replicative senescence and genomic instability in telomerase-negative cells. This research addresses the mechanisms linking telomere dynamics to aging processes, particularly replicative senescence, which is a fundamental aspect of cellular aging and longevity.
Agourakis, D. C., Gerenutti, M.
· health informatics
· Faculdade Sao Leopoldo Mandic
· medrxiv
Network geometry offers a principled lens for understanding the structure of biomedical knowledge. We apply exact Ollivier-Ricci curvature (ORC) -- a discrete analogue of Riemannian curvature computed via optimal transport -- to medical ontologies, disease comorbidity networks, b...
Network geometry offers a principled lens for understanding the structure of biomedical knowledge. We apply exact Ollivier-Ricci curvature (ORC) -- a discrete analogue of Riemannian curvature computed via optimal transport -- to medical ontologies, disease comorbidity networks, biological interaction networks, and brain functional connectivity graphs. Three main results emerge. First, within a single database (the Human Phenotype Ontology), the formal IS-A taxonomy is hyperbolic (mean ORC = -0.112, tree-like), while the disease co-occurrence network is spherical (mean ORC = +0.430, clique-rich) -- a six-order-of-magnitude gap in the density parameter that the curvature phase transition framework predicts without free parameters. Second, age-stratified disease comorbidity networks from 8.9 million Austrian hospital patients reveal a geometric aging trajectory: mean ORC increases monotonically from +0.018 (age 20-30) to +0.119 (age 80+), driven by rising clustering and density that encode the accumulation of multimorbidity. Third, sedenion (R16) Mandelbrot orbit features -- exploiting the zero-divisor structure of the Cayley-Dickson tower -- discriminate ASD-like from ADHD-like brain network topology (AUROC = 0.990, sedenion-only), providing complementary geometric information to ORC. Canonical biological networks (C. elegans neural, E. coli gene regulatory, protein-protein interaction) are uniformly spherical, suggesting that evolved biological networks universally favour redundant, triangle-rich connectivity. All core mathematical claims are machine-verified in Lean 4 (0 sorry in 7 core modules). These results establish ORC as a quantitative geometric biomarker for biomedical network analysis and demonstrate that the same phase transition framework governing semantic networks extends to clinical and biological domains.
Longevity Relevance Analysis
(5)
The paper claims that Ollivier-Ricci curvature can serve as a quantitative geometric biomarker for analyzing aging trajectories in disease comorbidity networks. The research connects geometric properties of networks to aging processes, suggesting a novel approach to understanding the accumulation of multimorbidity, which is relevant to the study of aging and longevity.
Dwaraka, V. B., Hassouneh, S. A.-D., Seale, K. ...
· genomics
· TruDiagnostic Inc.
· biorxiv
Whether distinct visible aging traits, e.g., wrinkling, pigmentation, and inflammation, reflect shared or independent epigenetic programs remains unknown; existing clocks compress aging into a single chronological axis, leaving the phenotype-specific architecture of cutaneous agi...
Whether distinct visible aging traits, e.g., wrinkling, pigmentation, and inflammation, reflect shared or independent epigenetic programs remains unknown; existing clocks compress aging into a single chronological axis, leaving the phenotype-specific architecture of cutaneous aging uncharacterized. Here, we integrate AI-derived facial phenotypes with skin DNA methylation profiles from 706 individuals to develop EpiVision, a panel of 21 epigenetic predictors spanning structural, pigmentary, inflammatory, and textural aging traits. Predictors reveal shared and trait-specific pathways, including developmental patterning, epithelial remodeling, hormonal signaling, and UV damage responses, and capture environmentally induced acceleration in sun-exposed skin alongside lifestyle and topical treatment associated variation. These findings establish that visible skin aging comprises molecularly distinct axes with shared regulatory substrates and trait-specific drivers, providing a scalable epigenetic framework for intervention evaluation and aging biology research.
Longevity Relevance Analysis
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The paper claims that visible skin aging is governed by distinct molecular pathways that can be predicted through DNA methylation profiles. This research is relevant as it explores the underlying biological mechanisms of aging, potentially leading to interventions that address the root causes of skin aging and contribute to the broader understanding of aging biology.
Harding, A. S., Coward, J., Tian, T.
· systems biology
· BH Biotech Pty Ltd
· biorxiv
A current impediment to bringing anti-aging therapies to market is the lack of accepted clinical endpoints that fit within reasonable trial time horizons and budgets. Recent theoretical models predict that sparse sampling of interconnected physiological subsystems can capture the...
A current impediment to bringing anti-aging therapies to market is the lack of accepted clinical endpoints that fit within reasonable trial time horizons and budgets. Recent theoretical models predict that sparse sampling of interconnected physiological subsystems can capture the essential dynamics of aging, suggesting that sparse biomarker panels could serve as surrogate endpoints for geroscience clinical trials. Here, we test this prediction using NHANES 1999-2018 data linked to the National Death Index. To overcome variable dropout caused by between-subsystem collinearity, we developed a two-stage dimensionality reduction architecture: Generalized Additive Models first compress each multi-variable subsystem into a single non-linear mortality risk score, which is then integrated via Levine's biological age algorithm. The resulting biological age estimates outperformed chronological age in predicting mortality and all fourteen age-related diseases examined, and detected the effects of diet, sleep, and physical activity on biological aging. Sex-stratified analysis revealed that the mortality sex gap penetrates to every physiological subsystem measured, with males and females requiring different biomarker panels - consistent with sex-specific differences in physiological network topology. Critically, male biological age was substantially more sensitive to both mortality prediction and lifestyle interventions than female biological age, a robustness-sensitivity trade-off predicted by network resilience theory. These findings carry direct implications for trial design: older males currently offer the most favourable signal-to-noise ratio for proof-of-concept geroscience trials using standard pathology tests, while the development of validated female-specific biomarker panels - capable of resolving the more distributed aging signal imposed by greater female physiological robustness - should be treated as an urgent and independent research priority.
Longevity Relevance Analysis
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The paper claims that sex-specific biomarker panels can improve biological age estimation and mortality prediction, which has implications for geroscience trial design. The research addresses the root causes of aging by exploring biological age estimation and its relationship with physiological subsystems, thereby contributing to the understanding of aging mechanisms and potential interventions.