Xiaona Wang, Tianbo Li, Huanyin Tang ...
· Sirtuin 1
· Shanghai Key Laboratory of Maternal Fetal Medicine, Clinical and Translational Research Center of Shanghai First Maternity and Infant Hospital, Frontier Science Center for Stem Cell Research, School of Life Sciences and Technology, Tongji University, Shanghai, China.
· pubmed
SIRT1, a sirtuin family member, has been extensively documented to be closely linked to aging and aging-related disease. Cellular senescence is a state of irreversible cell cycle arrest that functions as a key driver of aging. During cellular senescence, LINE-1 (L1) retrotranspos...
SIRT1, a sirtuin family member, has been extensively documented to be closely linked to aging and aging-related disease. Cellular senescence is a state of irreversible cell cycle arrest that functions as a key driver of aging. During cellular senescence, LINE-1 (L1) retrotransposable elements become transcriptionally activated and stimulate a type-I interferon (IFN-I) response. L1 activity has been strongly linked to aging and a variety of age-related disorders. However, whether SIRT1 influences cellular senescence through the transposable element L1 remains unknown. In this study, we discovered that SIRT1 significantly suppresses L1 retrotransposition. Under quiescent conditions, SIRT1 exhibits increased enrichment at the L1 5'-UTR region. This recruitment enhances its interaction with the heterochromatin-regulatory factors Lamin B1 and KAP1, subsequently elevating H3K9me3 levels. This repressive chromatin mark inhibits L1 transcription, thereby maintaining genomic stability and delaying cellular senescence. Consistent with these observations, SIRT1-deficient cell lines exhibited a marked reduction of the interaction of Lamin B1 and KAP1 and a reduced presence of these factors at the L1 5'-UTR. Consequently, the elevated L1 transcription resulting from SIRT1 deficiency activated the cGAS-STING pathway and ultimately triggered cellular senescence, an effect that was rescued by treatment with 3TC (a nucleoside reverse transcriptase inhibitor). In summary, our findings demonstrate that SIRT1 suppresses L1 retrotransposition by recruiting heterochromatin factors, thereby delaying cellular senescence and providing new insights with implications for delaying aging and mitigating age-related pathologies.
Longevity Relevance Analysis
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SIRT1 suppresses L1 retrotransposition by stabilizing heterochromatin-modifying complexes (Lamin B1 and KAP1) to maintain H3K9me3 levels, thereby delaying cellular senescence. This paper is relevant because it elucidates a specific molecular mechanism by which a known aging regulator (SIRT1) controls a key driver of aging (L1-mediated senescence), offering potential targets for interventions aimed at delaying the aging process rather than just treating symptoms.
Min Lei, Zhenye Zhu, Huihui Xie ...
· Nature aging
· Center for Reproductive Medicine, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China.
· pubmed
Ovarian aging precedes decline in many organs, but its mechanisms remain unclear. Here we show that aging oocytes accumulate cytoplasmic mitochondrial DNA (mtDNA) through increased mtDNA leakage, activating the cyclic GMP-AMP synthase (cGAS) pathway to produce cGAMP and trigger s...
Ovarian aging precedes decline in many organs, but its mechanisms remain unclear. Here we show that aging oocytes accumulate cytoplasmic mitochondrial DNA (mtDNA) through increased mtDNA leakage, activating the cyclic GMP-AMP synthase (cGAS) pathway to produce cGAMP and trigger stimulator of interferon genes (STING) signaling. Notably, oocyte-derived cGAMP can pass through gap junctions to surrounding granulosa cells (GCs), activating STING signaling in GCs as well. To model age-associated mitochondrial dysfunction, we generated oocyte-specific Tfam-knockout mice, which recapitulated mtDNA leakage, STING pathway activation in both oocytes and GCs, inflammation and accelerated ovarian dysfunction. We also used Opa1 knockdown and Pink1 deletion oocytes as complementary mitochondrial stress models and observed mtDNA leakage and cGAS-STING activation in both settings. Notably, oocyte-specific Cgas deletion in Tfam mutants or pharmacological STING inhibition with H-151 ameliorated ovarian dysfunction. These findings establish oocyte mtDNA leakage as a causal driver of ovarian aging and nominate cGAS-STING signaling as a therapeutic target.
Longevity Relevance Analysis
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The paper claims that cytoplasmic mitochondrial DNA leakage in oocytes activates cGAS-STING signaling, which causally drives ovarian aging and dysfunction. This is relevant because it identifies a specific, causal molecular mechanism (innate immune activation via mtDNA leakage) underlying a primary aspect of biological aging (reproductive senescence) and demonstrates that inhibiting this pathway can ameliorate the aging phenotype, offering a potential therapeutic target for age-related decline.
Guangwei Wang, Xi Chen, Yihao Ge ...
· Angewandte Chemie (International ed. in English)
· Engineering Research Center of Western Resource Innovation Medicine Green Manufacturing of the Ministry of Education, School of Chemical Engineering, College of Chemistry and Materials Science, Northwest University, Xi'an, China.
· pubmed
The majority of human senescent cells exhibit overexpression of senescence-associated β-galactosidase (SA-β-gal), rendering this enzyme the most extensively utilized biomarker of senescence and a key prodrug target for intervening in aging. However, strategies for the authentic i...
The majority of human senescent cells exhibit overexpression of senescence-associated β-galactosidase (SA-β-gal), rendering this enzyme the most extensively utilized biomarker of senescence and a key prodrug target for intervening in aging. However, strategies for the authentic in situ identification of SA-β-gal with single-molecule resolution have not been established, limiting the accuracy of senescence targeting. Here we present an unprecedented molecular approach to identify SA-β-gal in a manner that avoids dissociation from the target enzyme, which integrates the atomic hybridization of SA-β-gal substrates with protein-environment-sensitive fluorescence technology. Using this design principle, we created nine fluorescent probes with distinct working modes for the single-molecule (target enzyme)-resolved identification of SA-β-gal. Five of them formed crystal complexes with the wild-type β-galactosidase by binding at the active site, clearly evidencing their single-molecule resolution capability. Our strategy, capable of both identifying and locating SA-β-gal, facilitated its application in dynamic single-molecule localization microscopic imaging, achieving the in situ tracking of SA-β-gal in living cells at the nanoscale. Significantly, the probing of SA-β-gal with high fidelity enabled the precise evaluation of the aging degree in mice. As such, our research provides a promising method for the authentic in situ identification of this senescence-associated protein with single-molecule resolution.
Longevity Relevance Analysis
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The paper demonstrates that a new class of fluorescent probes can identify and track senescence-associated β-galactosidase (SA-β-gal) in living cells with single-molecule resolution. This is relevant to longevity research because SA-β-gal is a primary biomarker for cellular senescence, a key driver of aging, and high-fidelity detection is essential for accurately evaluating the efficacy of senolytic or senomorphic interventions.
Xiaohan Yang, Yanni Wu, Yi Yang ...
· The Journal of physiology
· Animal Nutrition Institute, Sichuan Agricultural University, Chengdu, China.
· pubmed
Dietary protein restriction (PR) is a well-recognized nutritional intervention that enhances metabolic health and extends lifespan. However, the mechanisms behind this phenomenon are not well understood. Here, using genetic loss-of-function models for fibroblast growth factor 21 ...
Dietary protein restriction (PR) is a well-recognized nutritional intervention that enhances metabolic health and extends lifespan. However, the mechanisms behind this phenomenon are not well understood. Here, using genetic loss-of-function models for fibroblast growth factor 21 (Fgf21) and its obligate co-receptor β-Klotho (Klb), we demonstrate that FGF21-KLB signalling in adipocytes is indispensable for the anti-senescence effects of PR. Specifically, adipocyte FGF21 signalling preserves mitochondrial integrity, maintains an anti-inflammatory milieu and sustains nicotinamide adenine dinucleotide (NAD
Longevity Relevance Analysis
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Adipocyte FGF21-KLB signalling is indispensable for the anti-senescence effects of protein restriction by preserving mitochondrial integrity and maintaining an anti-inflammatory milieu. This paper identifies a specific molecular mechanism (FGF21 signaling in adipocytes) that mediates the lifespan-extending benefits of dietary protein restriction, providing a crucial mechanistic link between nutritional intervention and cellular aging processes.
Matej Durik, Mona Karout, Daniel Sampaio Gonçalves ...
· Developmental cell
· Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), Équipe Labellisée Ligue Contre le Cancer, Illkirch, France; UMR7104, Centre National de la Recherche Scientifique (CNRS), Illkirch, France; U1258, Institut National de la Santé et de la Recherche Médicale (INSERM), Illkirch, France; Université de Strasbourg, Illkirch, France. Electronic address: durikm@igbmc.fr.
· pubmed
Cellular senescence is a state of stable arrest and secretion linked to aging and disease. Here, we identify that senescent cells dispose of large fragments through cell-to-cell adhesion, which we term "senescent-cell adhesion fragments" (SCAFs). Found in many senescent states, i...
Cellular senescence is a state of stable arrest and secretion linked to aging and disease. Here, we identify that senescent cells dispose of large fragments through cell-to-cell adhesion, which we term "senescent-cell adhesion fragments" (SCAFs). Found in many senescent states, including human and mouse cells, and mouse tissues, SCAFs lack nuclear material but contain organelles, including damaged mitochondria. Disrupting adherens junctions decreases SCAF formation but induces senescent-cell death, due to an inability to shed damaged mitochondria. Live imaging and proteomics show that SCAFs ultimately rupture, releasing a complex proteome, including damage-associated molecular patterns (DAMPs) and proteins linked to neurodegenerative disease. Functionally, SCAFs activate wound-healing and cancer-related programs, promoting migration and invasion. Immunostaining also reveals amyloid-like material in senescent cells that can be externalized through fragmentation. Altogether, these findings identify a feature that facilitates senescent cell survival but also externally deposits damaged intracellular contents, with implications for cancer and neurodegeneration.
Longevity Relevance Analysis
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Senescent cells maintain viability by shedding damaged organelles via adhesion-dependent fragmentation (SCAFs), a process that prevents cell death but releases DAMPs and amyloid-like material that drives inflammation and disease. This is relevant because it identifies a specific mechanism of senescent cell survival and a novel source of age-related tissue damage (debris deposition) that could be targeted to enhance senolytic efficacy or reduce the pro-aging secretory phenotype without necessarily killing the cell.
Huma Naz, Nannan Lu, Caroline C Escoubas, ★ Tony Wyss-Coray ...
· Cell reports
· Department of Genetics, Washington University School of Medicine, St. Louis, MO 63110, USA.
· pubmed
Aging is associated with immune dysregulation in the brain and is the greatest risk factor for many neurodegenerative diseases. Rejuvenation interventions can mediate beneficial effects. Microglia are major contributors to neurodegenerative disease progression; however, the molec...
Aging is associated with immune dysregulation in the brain and is the greatest risk factor for many neurodegenerative diseases. Rejuvenation interventions can mediate beneficial effects. Microglia are major contributors to neurodegenerative disease progression; however, the molecular changes underlying brain aging and rejuvenation remain poorly understood at the single-cell level. We identified and benchmarked several reproducible microglial states and a core set of genes that drive microglial activation in the mouse brain. We investigated microglial heterogeneity and examined the impact of aging and parabiosis-mediated exposure to young and old blood on microglial subpopulations across four brain regions: the cerebellum, cortex, hippocampus, and striatum. We revealed region-specific differences in microglial composition and age-related changes. The cerebellum consistently emerged as the most responsive region, whereas the striatum showed minimal responsiveness to parabiosis interventions. These findings highlight regional vulnerability and inform microglia-targeted strategies to modulate brain aging.
Longevity Relevance Analysis
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The paper identifies a core set of genes driving microglial activation and demonstrates that the cerebellum is the most responsive brain region to rejuvenation via parabiosis. This is relevant because it investigates the cellular mechanisms of brain aging and the specific regional vulnerabilities that can be modulated by rejuvenation interventions, rather than merely treating downstream symptoms of neurodegeneration.
Palomares, D., Jorgji, J., Saleki, S. ...
· neuroscience
· Aging and Dementia group, Cellular and Molecular Division (CEMO), Institute of Neuroscience (IoNS), UCLouvain, Brussels, Belgium.
· biorxiv
Neurodegenerative diseases, including Alzheimer's disease (AD), are strongly associated with aging. However, the molecular mechanisms underlying pathological brain aging remain incompletely understood. In this study, we used a mouse model of telomere attrition, a major driver of ...
Neurodegenerative diseases, including Alzheimer's disease (AD), are strongly associated with aging. However, the molecular mechanisms underlying pathological brain aging remain incompletely understood. In this study, we used a mouse model of telomere attrition, a major driver of cellular senescence, to perform an unbiased analysis of how telomere-driven senescence affects cellular physiology and contributes to processes relevant to neurodegenerative conditions. After validating the presence of senescence hallmarks in telomerase-deficient brains, we characterized their transcriptomic and proteomic profiles. Mitochondrial function and associated energy metabolism emerged as the major dysregulated pathways, driven predominantly by proteomic rather than transcriptomic changes. Functional biochemical analyses on isolated brain mitochondria demonstrated impaired electron transport chain (ETC) complex activity and reduced energetic status, despite preserved ETC complex integrity and mitochondrial content. Further analyses in senescent primary neurons indicated an accumulation of dysfunctional mitochondria, characterized by increased reactive oxygen species (ROS) production and reduced ATP levels, although basal cellular respiration was maintained. At the tissue level, these alterations were associated with moderate reductions in neuronal density in the subiculum and cortical layer V, indicating region-specific vulnerability rather than widespread neurodegeneration. We propose that a major consequence of telomere dysfunction associated with pathological brain aging is the downregulation of mitochondrial activity, which contributes to the selective vulnerability of specific brain regions. These findings highlight mitochondrial pathways as attractive targets for interventions aimed at preserving brain health during aging.
Longevity Relevance Analysis
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The paper claims that telomere-driven cellular senescence causes brain aging primarily through the downregulation of mitochondrial activity and energy metabolism, leading to region-specific neuronal loss. This is relevant because it identifies a specific mechanistic link between a fundamental driver of aging (telomere attrition) and a key physiological decline (mitochondrial dysfunction) in the brain, offering a potential target for interventions aimed at preserving brain health during the aging process rather than just treating downstream neurodegenerative symptoms.
Stefano Donega, Kenneth W Fishbein, Paolo Dominelli, ★ Rafael de Cabo, ★ Luigi Ferrucci ...
· Oxygen
· Translational Gerontology Branch (TGB), National Institute on Aging (NIA), Intramural Research Program (IRP), National Institutes of Health (NIH), Baltimore, Maryland, USA.
· pubmed
The stepwise movement of oxygen from the atmosphere to the mitochondria, the "oxygen cascade", is one of the most tightly regulated systems in physiology. Despite decades of mechanistic study, it has remained quite unexplored in Geroscience. This oversight should be reconsidered....
The stepwise movement of oxygen from the atmosphere to the mitochondria, the "oxygen cascade", is one of the most tightly regulated systems in physiology. Despite decades of mechanistic study, it has remained quite unexplored in Geroscience. This oversight should be reconsidered. In young organisms, hypoxic stress (whether environmental or tissue-specific) activates a complex adaptive response to preserve energetic stability via restraining anabolic pathways, optimizing mitochondrial performance, and reinforcing cellular quality control systems. With advancing age, angiostatic signaling increases, endothelial metabolism becomes dysregulated, and overall alveolar ventilation and pulmonary gas exchange (ventilation-perfusion matching and diffusion capacity) become less efficient. These changes promote microvascular rarefaction and low-grade but persistent mismatches between oxygen delivery and demand at the tissue level, ultimately destabilizing cellular function. In this review, we propose that the gradual erosion of oxygen homeostasis is not simply a byproduct of aging, but also a driver of molecular damage and functional decline. We examine the aging oxygen cascade through the framework of resilience biology, focusing on mechanisms such as mitochondrial electron leaks, oxidative stress amplification, iron dyshomeostasis, ferroptosis, and epigenetic remodeling. We also discuss interventions that alter oxygen availability, such as intermittent hypoxia, hyperbaric oxygen therapy, and hypoxic-hyperoxic training. These approaches demonstrate adaptive potential, but they also highlight the narrow margin between beneficial stress and injury. We propose "Oxygenaging" as a unifying framework in which aging associates with the progressive loss of equilibrium across the oxygen cascade, linking systemic oxygen transport to mitochondrial function, genomic stability, and cellular resilience.
Longevity Relevance Analysis
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The paper proposes that the progressive erosion of oxygen homeostasis across the "oxygen cascade" is a primary driver of molecular damage and functional decline in aging, rather than just a byproduct. This is a conceptual review that synthesizes existing physiological data to propose a unifying framework ("Oxygenaging") for geroscience, offering a new perspective on the root causes of aging but lacking novel experimental data or a specific mechanistic breakthrough.
Yaqian Cao, Chunhui Song, Xiaoqing Sun ...
· Chemico-biological interactions
· Science and Technology Innovation Center, Guangzhou University of Chinese Medicine, Guangzhou, 510405, China.
· pubmed
Intestinal aging is characterized by impaired intestinal stem cell (ISC) function, reduced mucosal regenerative capacity, and progressive epithelial barrier deterioration. However, the upstream metabolic and epigenetic mechanisms that regulate ISC homeostasis during aging remain ...
Intestinal aging is characterized by impaired intestinal stem cell (ISC) function, reduced mucosal regenerative capacity, and progressive epithelial barrier deterioration. However, the upstream metabolic and epigenetic mechanisms that regulate ISC homeostasis during aging remain poorly understood. This study aimed to determine how SIRT6 regulates ISC homeostasis during intestinal aging and to investigate whether Atractylenolide II (AT-II) can alleviate age-related ISC dysfunction. Jejunal tissues from young and aged mice, intestinal epithelial-specific Sirt6-deficient mice, and 3D intestinal organoids were used to evaluate crypt-villus morphology, ISC activity, and lineage differentiation. Mechanistic analyses included western blotting, immunofluorescence, and retinoic acid (RA) quantification, complemented by pharmacological and rescue experiments targeting RXRα activity and RA metabolic balance. The results showed that SIRT6 protein expression was markedly reduced in the aged jejunum, correlating with a decreased villus-to-crypt (V/C) ratio, impaired ISC proliferation, and altered epithelial differentiation. Intestinal epithelial deletion of Sirt6 recapitulated aging-related intestinal defects, including crypt atrophy and ISC-associated dysfunction. Consistently, aged organoids displayed reduced SIRT6 protein expression, while Sirt6
Longevity Relevance Analysis
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SIRT6 maintains intestinal stem cell homeostasis during aging by regulating RXRα/retinoic acid signaling, and Atractylenolide II can restore this function. This paper is relevant because it identifies a specific epigenetic and metabolic mechanism (SIRT6/RA axis) underlying age-related tissue degeneration and demonstrates that pharmacological modulation can reverse these aging-associated defects, contributing to the understanding of how to maintain tissue regenerative capacity in the aged.
Feifei Li, Yankai Wang, Gelin Wang ...
· Aging
· National Institute of Biological Sciences, Beijing, China.
· pubmed
The global prevalence of aging and age-related diseases has increased markedly in recent decades due to extended life expectancy and a growing aging population, posing substantial medical and social burdens. Multiple strategies, including metabolic modulation (e.g., physical exer...
The global prevalence of aging and age-related diseases has increased markedly in recent decades due to extended life expectancy and a growing aging population, posing substantial medical and social burdens. Multiple strategies, including metabolic modulation (e.g., physical exercise, calorie restriction, and calorie restriction mimetics), targeting inflammaging, senotherapy, parabiosis, stem cell-based therapies, and epigenetic rejuvenation, have shown promise in slowing aging and extending lifespan in preclinical models, with some demonstrating efficacy in clinical trials. This review summarizes the current status of leading anti-aging interventions, their clinical progress, and the underlying mechanisms, which include enhancing autophagy, clearing senescent cells and supporting mitochondrial function to reduce chronic inflammation. We propose that metabolic modulation, inflammaging control, and senotherapy constitute three interconnected pillars of contemporary anti-aging strategies.
Longevity Relevance Analysis
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The paper proposes that metabolic modulation, inflammaging control, and senotherapy are three interconnected pillars of contemporary anti-aging strategies. This is a review article summarizing existing knowledge and clinical progress rather than presenting novel experimental data or a new mechanistic discovery, resulting in a minor incremental contribution to the field.
Karla Valdivieso, Melanie Weigand, Daniela G Costa, ★ James L Kirkland ...
· Cyclin-Dependent Kinase Inhibitor p16
· Department of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, Minnesota, USA.
· pubmed
Genotoxic stress induced by cancer therapies is increasingly recognized as a driver of accelerated aging in long-term cancer survivors, yet the mechanisms responsible for the emergence of age-related dysfunction months to years after treatment remain poorly understood. Here, we u...
Genotoxic stress induced by cancer therapies is increasingly recognized as a driver of accelerated aging in long-term cancer survivors, yet the mechanisms responsible for the emergence of age-related dysfunction months to years after treatment remain poorly understood. Here, we use sublethal whole-body irradiation as a model of systemic genotoxic stress to test whether senescent cells contribute to the progression of post-therapy age-related dysfunction and whether the benefits of senescent cell clearance depend on the timing of intervention. Using the INK-ATTAC mouse model, we selectively eliminated p16
Longevity Relevance Analysis
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The paper claims that the timing of senescent cell clearance is critical for mitigating radiation-induced accelerated aging, with early intervention being more effective than late intervention. This is relevant because it investigates the mechanism of senescence as a driver of age-related dysfunction and tests a specific intervention (senolytics) to prevent the acceleration of the aging process, rather than just treating the symptoms of a specific disease.
Jason W Miklas, Katharina Papsdorf, Eric D Sun, ★ Anne Brunet ...
· Cell reports
· Department of Genetics, Stanford University, Stanford, CA, USA.
· pubmed
Secreted proteins are essential to modulate homeostasis in the extracellular space and facilitate communication to distal cells or tissues. Yet, the identity and functional importance of extracellular proteins in aging have been understudied. Here we use proximity labeling follow...
Secreted proteins are essential to modulate homeostasis in the extracellular space and facilitate communication to distal cells or tissues. Yet, the identity and functional importance of extracellular proteins in aging have been understudied. Here we use proximity labeling followed by quantitative proteomics to systematically characterize proteins along the intestinal secretory pathway in C. elegans, focusing on secreted proteins. We identify intestine-secreted proteins that are modulated with age, and validate the secretion of these proteins in vivo. One of these secreted proteins, ACP7, is well conserved in humans, and its overexpression extends lifespan in a secretion-dependent manner. Interestingly, we find that ACP7 acts as a secreted phosphatase in the extracellular space. Finally, we identify additional proteins along the secretory pathway that regulate lifespan. Our systematic characterization of tissue-specific secreted proteins during aging uncovers conserved proteins that impact lifespan and highlights extracellular enzymes associated with lifespan regulation.
Longevity Relevance Analysis
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The paper claims that the conserved intestinal secreted phosphatase ACP7 extends C. elegans lifespan in a secretion-dependent manner. This is relevant because it identifies a specific, conserved extracellular enzyme as a regulator of lifespan, providing a mechanistic insight into how tissue-specific secretory pathways modulate aging, though the impact is limited by the use of a simple model organism and the lack of direct human validation.
Xupeng Liu, Ziyue Yao, Liping Zhang ...
· Nature aging
· State Key Laboratory of Organ Regeneration and Reconstruction, Institute of Zoology, Chinese Academy of Sciences, Beijing, China.
· pubmed
Skeletal muscle is the main motor organ and plays a vital role in regulating systemic metabolism and aging. Exercise interventions can address many metabolic and degenerative diseases associated with aging, though alternative strategies may be needed when exercise is contraindica...
Skeletal muscle is the main motor organ and plays a vital role in regulating systemic metabolism and aging. Exercise interventions can address many metabolic and degenerative diseases associated with aging, though alternative strategies may be needed when exercise is contraindicated, inaccessible or insufficient. Here we developed subcutaneous transplantation of differentiated autologous myocytes (myografts). Myografts exhibited mature, vascularized structures that self-contract continuously in mice. Myografts improve whole-body muscle mass and function, and metabolic and regenerative outcomes in aging and obese mouse models. In addition, myografts provide a stable source of virally transduced therapeutic proteins, such as parathyroid hormone and growth hormone, which may counteract bone or muscle loss without observed side effects. This approach opens a path for the application of cell and gene therapy in the treatment of diseases of aging.
Longevity Relevance Analysis
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Subcutaneous transplantation of differentiated autologous myocytes creates a functional, vascularized muscle graft that improves systemic metabolic and regenerative outcomes in aging mice. This is relevant because it proposes a direct cellular intervention to restore the endocrine and metabolic functions of skeletal muscle, a key driver of systemic aging, rather than merely treating isolated age-related symptoms.
John C Martinez, Francesco Morandini, Cheyenne Rechsteiner ...
· Nature aging
· Translational Biomedical Sciences Program, University of Rochester Medical Center, Rochester, NY, USA.
· pubmed
Aging-associated inflammation is a driver of multiple age-associated diseases. Cyclic GMP-AMP synthase (cGAS) contributes to inflammaging by responding to endogenously-derived cytoplasmic DNA in aged cells. Although cGAS-knockout (KO) mice are viable, their aging has not been cha...
Aging-associated inflammation is a driver of multiple age-associated diseases. Cyclic GMP-AMP synthase (cGAS) contributes to inflammaging by responding to endogenously-derived cytoplasmic DNA in aged cells. Although cGAS-knockout (KO) mice are viable, their aging has not been characterized. Unexpectedly, we found that cGAS KO mice exhibit an accelerated-aging phenotype, with induction of inflammation in multiple organs. cGAS KO mice display shortened median lifespan and increased frailty relative to wild-type mice. They show increased transcription of long interspersed nuclear element 1 (LINE1) retrotransposons, decreased DNA methylation on LINE1 elements and high levels of cytoplasmic LINE1 complementary DNA, which triggers inflammation, and this phenotype is recapitulated by cGAS knockdown in vitro. Furthermore, cells from cGAS KO mice show a smoothed H3K9me3 chromatin landscape and increased chromatin accessibility. In summary, our results show that cGAS functions to maintain heterochromatin organization in the nucleus, independent of its cytoplasmic role as a DNA sensor or its catalytic activity, with implications for geroprotective strategies targeting this pathway.
Longevity Relevance Analysis
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The paper demonstrates that cGAS maintains nuclear heterochromatin and suppresses LINE1 retrotransposons independently of its cytoplasmic DNA-sensing role, and that loss of this function leads to premature aging phenotypes. This is relevant because it identifies a novel, non-canonical mechanism of aging (epigenetic instability and retrotransposon derepression) driven by a key innate immune sensor, suggesting that cGAS inhibition might have complex, potentially detrimental effects on genomic stability and lifespan that must be considered in geroprotective strategies.
Lingyan Jin, Tiannan Jiang, Haoyu Gong ...
· Biochimica et biophysica acta. Molecular basis of disease
· Department of Cardiology, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi, China.
· pubmed
Atrial fibrillation (AF) is an age-related disease associated with substantial morbidity and mortality. Although rapamycin stands as a foremost anti-aging therapy with proven efficacy in lifespan extension, a critical gap exists in understanding its impact on aging-induced atrial...
Atrial fibrillation (AF) is an age-related disease associated with substantial morbidity and mortality. Although rapamycin stands as a foremost anti-aging therapy with proven efficacy in lifespan extension, a critical gap exists in understanding its impact on aging-induced atrial remodeling and AF susceptibility.
Longevity Relevance Analysis
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Rapamycin attenuates age-related atrial remodeling and fibrillation by targeting HIF-1α-mediated metabolic dysregulation. This paper is relevant because it investigates the mechanism by which a proven lifespan-extending drug (rapamycin) mitigates a specific age-related pathology, thereby providing mechanistic insight into how mTOR inhibition protects against aging-induced tissue dysfunction.
Xiaoyong Lu, Jun Ping, Zichu Han ...
· Nature aging
· Beijing Key Laboratory of Intelligent Governance and Application of Biological Big Data, China National Center for Bioinformation and Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
· pubmed
The gut microbiome profoundly influences host aging, yet the specific microbes and mechanisms governing divergent aging trajectories remain elusive. In this study, we delineated enterotype-specific gut microbial remodeling during aging and developed a microbiome-based aging clock...
The gut microbiome profoundly influences host aging, yet the specific microbes and mechanisms governing divergent aging trajectories remain elusive. In this study, we delineated enterotype-specific gut microbial remodeling during aging and developed a microbiome-based aging clock (MicroAge) to track biological aging trajectories. We identified Bifidobacterium pseudocatenulatum (B. pseudocatenulatum) as a candidate geroprotective species consistently depleted during aging across both sexes and multiple Chinese cohorts. In naturally aged mice, oral B. pseudocatenulatum monotherapy rescued intestinal homeostasis, mitigated multiorgan inflammaging, enhanced cognitive-motor performance and extended healthspan. Mechanistically, we characterized 5-aminovaleric acid betaine (5-AVAB) as a key B. pseudocatenulatum-derived metabolite whose levels decline physiologically in aging humans. 5-AVAB supplementation partially recapitulated a broad spectrum of the systemic benefits observed with B. pseudocatenulatum treatment, including improved cognitive and motor function and suppressed multiorgan inflammaging. Our findings identify the B. pseudocatenulatum-5-AVAB axis as a promising target for microbiome-based interventions to promote healthy aging.
Longevity Relevance Analysis
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The administration of the probiotic Bifidobacterium pseudocatenulatum or its metabolite 5-aminovaleric acid betine extends healthspan and mitigates inflammaging in mice by restoring intestinal homeostasis. This work represents an incremental advance in the field of microbiome-based geroprotection, identifying a specific bacterial strain and metabolite associated with healthy aging, but it lacks the transformative novelty or robust human translational data required for higher impact scores.
Qin Liu, Haiqing Tang
· Caenorhabditis elegans
· School of Life Sciences, Chongqing University, Chongqing, 401331, China.
· pubmed
Aging is a complex biological process governed by conserved genetic and metabolic pathways. Increasing evidence has identified the gut microbiota as a critical modulator of host aging and healthspan. The Caenorhabditis elegans model provides a powerful system to elucidate the mol...
Aging is a complex biological process governed by conserved genetic and metabolic pathways. Increasing evidence has identified the gut microbiota as a critical modulator of host aging and healthspan. The Caenorhabditis elegans model provides a powerful system to elucidate the molecular determinants of this cross-kingdom dialogue. Recent advances in this model organism reveal that gut microbes may regulate aging through two distinct yet convergent mechanisms: (i) the production of small-molecule metabolites that modulate conserved host longevity pathways, and (ii) the presentation of structural components that trigger hormetic defense responses via immune recognition. This review synthesizes these findings, offering a framework for understanding microbial contributions to aging and highlighting potential directions for future research aimed at extending healthspan in higher organisms.
Longevity Relevance Analysis
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This review synthesizes existing knowledge on how gut microbiota metabolites and structural components influence aging pathways in C. elegans, proposing a framework for future research rather than presenting novel experimental data or a transformative breakthrough. The paper is relevant because it addresses the root causes of aging through conserved genetic and metabolic mechanisms, but its impact is limited as it is a descriptive summary of known interactions rather than a source of new, surprising findings.
Fangbing Chen, Yanhui Liang, Wei Zheng ...
· DNA, Mitochondrial
· China-New Zealand Joint Laboratory on Biomedicine and Health, Guangdong Provincial Key Laboratory of Stem Cell and Regenerative Medicine, Institute of Development and Regeneration, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, Guangdong 510530, China.
· pubmed
The accumulation of mitochondrial DNA (mtDNA) mutations is a primary driver of mitochondrial dysfunction, which is intrinsically linked to aging and various pathologies. POLG, the catalytic subunit of DNA polymerase gamma, is essential for mtDNA replication; notably, a deficiency...
The accumulation of mitochondrial DNA (mtDNA) mutations is a primary driver of mitochondrial dysfunction, which is intrinsically linked to aging and various pathologies. POLG, the catalytic subunit of DNA polymerase gamma, is essential for mtDNA replication; notably, a deficiency in its proofreading function precipitates the accumulation of mtDNA mutations. In this study, by combining prime editing with somatic cell nuclear transfer technology, we successfully generated a mitochondrial mutator pig model expressing proofreading-deficient POLG. These pigs exhibited elevated somatic mtDNA mutation loads and recapitulated key premature aging phenotypes, including weight loss, rough hair coat, anemia, structural alterations in the skin and testicular interstitium, increased apoptosis, and the up-regulation of senescence-associated markers, culminating in shortened life span. Given the physiological and metabolic similarities between pigs and humans, this mitochondrial mutator pig model represents an ideal preclinical tool for dissecting the mechanistic role of mtDNA mutations in aging and age-related pathologies and for accelerating the translation of therapeutic strategies.
Longevity Relevance Analysis
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The authors generated a pig model with proofreading-deficient POLG to demonstrate that accumulated mtDNA mutations drive premature aging phenotypes, providing a preclinical tool for studying mitochondrial aging mechanisms. This work is an incremental application of existing mutator mouse models to a larger species, offering limited novel mechanistic insight while primarily serving as a technical validation of the model's utility for future therapeutic testing.
Yoshihito Kishita, Manabu Tsuda, Yukiko Sato-Miyata ...
· Longevity
· Diagnostics and Therapeutics of Intractable Diseases, Graduate School of Medicine, Intractable Disease Research Center, Juntendo University, 2-1-1, Hongo, Bunkyo-ku, Tokyo, 113-8421, Japan.
· pubmed
Lipoic acid is an essential cofactor for mitochondrial multienzyme complexes, and mutations in the lipoyltransferase LIPT2 cause severe metabolic and neurological defects in humans. In Drosophila, two independent lipT2 loss-of-function alleles cause severe physiological abnormali...
Lipoic acid is an essential cofactor for mitochondrial multienzyme complexes, and mutations in the lipoyltransferase LIPT2 cause severe metabolic and neurological defects in humans. In Drosophila, two independent lipT2 loss-of-function alleles cause severe physiological abnormalities in homozygotes. Here, we show that heterozygotes for these same alleles exhibit significantly extended lifespan and delayed age-dependent decline in locomotor performance. Metabolic analysis revealed no major alterations in central carbon metabolites or cellular energy status, indicating that overall metabolic homeostasis is largely preserved. In contrast, LipT2 heterozygosity was associated with reduced DCF fluorescence and selective changes in redox-related metabolites, including glutathione and urate. LipT2 heterozygotes also exhibited enhanced resistance to paraquat-induced oxidative stress without induction of canonical antioxidant genes. These findings indicate that partial reduction of LipT2 activity is associated with selective remodeling of cellular redox homeostasis while preserving metabolic homeostasis, providing a physiological state associated with longevity and enhanced stress resistance. Thus, the effects of LipT2 deficiency are strongly dependent on gene dosage, with moderate reduction being associated with longevity and maintenance of physiological function rather than overt metabolic dysfunction.
Longevity Relevance Analysis
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Partial reduction of the mitochondrial lipoyltransferase LipT2 extends lifespan and enhances stress resistance in Drosophila by remodeling redox homeostasis while preserving metabolic stability. The study provides modest evidence for a specific genetic mechanism of longevity in a model organism, representing an incremental advance rather than a transformative discovery.
Nataliya Kolotyeva, Svetlana Novikova, Eugenia Namiot ...
· Cell biochemistry and biophysics
· Russian Center of Neurology and Neurosciences, Moscow, 125367, Russia. kolotyeva.n.a@neurology.ru.
· pubmed
Reductive stress refers to a pathological shift toward a more reduced state in one or more defined redox couples, including NAD+/NADH, NADP+/NADPH, and GSSG/GSH, within specific cellular or subcellular compartments. Low-molecular-weight (LMW) thiols, including cysteine, cysteamin...
Reductive stress refers to a pathological shift toward a more reduced state in one or more defined redox couples, including NAD+/NADH, NADP+/NADPH, and GSSG/GSH, within specific cellular or subcellular compartments. Low-molecular-weight (LMW) thiols, including cysteine, cysteamine, glutathione, homocysteine, and hydrogen sulfide, contribute to cellular redox buffering, thiol-disulfide exchange, and redox-dependent metabolic regulation. Under chronic activation of antioxidant enzymatic systems, expansion of the reduced thiol pool may shift redox homeostasis toward a hyperreduced state, suppress physiological ROS-dependent signaling, and impair protein thiol-disulfide regulation. This review examines the cellular and molecular mechanisms of reductive stress within the neurovascular unit, the functional complex comprising microcapillary endothelial cells, pericytes, astrocytes, and neurons that maintains blood-brain barrier integrity and metabolic coupling. A reductive imbalance disrupts physiological redox signaling, impairs mitochondrial function, induces endoplasmic reticulum stress and the unfolded protein response (UPR), dysregulates ion channels and calcium homeostasis, promotes DNA damage, and activates cellular senescence programs and inflammasomes. Critically, reductive stress is not isolated but forms an integrated pathological network with oxidative, nitrosative, and glycation stresses, creating a self-sustaining cycle of mitochondrial dysfunction, macromolecular damage, and chronic neuroinflammation. Particular attention is given to compartment-specific redox regulation by mitochondrial glutathione and the peroxiredoxin/thioredoxin system, the dual role of ROS as physiological second messengers and mediators of secondary oxidative injury, and the links between hyperreduction, cellular senescence, AGE/RAGE signaling, and BBB dysfunction. We emphasize that reliable identification of reductive stress requires the simultaneous, compartment-resolved assessment of several redox couples and their functional consequences. This review also summarizes experimental approaches for modeling and detecting reductive stress and discusses emerging therapeutic strategies, including xenotopic enzymes, genetically encoded metabolic tools, and NAD+ modulation, aimed at restoring redox homeostasis and slowing neurodegeneration and aging.
Longevity Relevance Analysis
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The paper proposes that reductive stress, characterized by an overly reduced cellular state, contributes to neurodegeneration and brain aging by disrupting redox signaling and mitochondrial function, thereby offering a potential mechanistic target for longevity interventions. This review synthesizes existing knowledge on redox biology in the context of aging rather than presenting novel experimental data or a transformative breakthrough, representing an incremental conceptual advance in understanding the metabolic drivers of age-related decline.
Abdelhady, G., Su, Q., Wang, A. Z. ...
· genomics
· Carnegie Mellon University
· biorxiv
Age is the primary risk factor for neurodegenerative diseases, which are characterized by cell-type-specific vulnerability. Yet brain-aging mechanisms remain unclear given the complex, interacting age-associated pathways across diverse neural cell types. Here, we dissect cell typ...
Age is the primary risk factor for neurodegenerative diseases, which are characterized by cell-type-specific vulnerability. Yet brain-aging mechanisms remain unclear given the complex, interacting age-associated pathways across diverse neural cell types. Here, we dissect cell type- cell state-specific aging gene regulatory programs and their contribution to cellular vulnerability by leveraging epigenomics, AI methodology, and natural lifespan diversity across placental mammals. Applying the TACIT method, we associated lifespans of 240 placental mammals to the predicted open chromatin levels of over 3 million orthologous loci across 18 cortical cell types. We identified thousands of lifespan-associated open chromatin regions, enriched near genes associated with hallmarks of aging, which stratified greatly by cell type. For example, regions near mitochondrial genes showed differential selective pressure in long-lived species in energetically-demanding layer V ET neurons, while regions near inflammatory response genes were under selective pressure in glial populations. We next asked whether regions linked to vulnerable or resilient neurons in the human brain were under differential selective pressure in longer lived species. Using an adaptive representation learning approach, we decompose intrinsic aging programs from systemic effects in the prefrontal cortex and define an aging signature predictive of cell-type-specific vulnerability. In Alzheimer's disease, this intrinsic aging signature more strongly predicts vulnerability than systemic effects. Active regions in vulnerable neurons showed lower predicted activity in species with longer lifespans, suggesting selective pressure to down-regulate the vulnerability-associated networks. Overall, our findings argue against a single master regulator of aging, instead implicating different hallmarks across different cell types.
Longevity Relevance Analysis
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The paper claims that specific epigenetic signatures associated with neuronal vulnerability in humans are under selective pressure in long-lived mammalian species, suggesting that down-regulating these vulnerability networks is a key evolutionary mechanism for extended lifespan. This is highly relevant because it moves beyond treating symptoms of neurodegeneration to identify the fundamental, cell-type-specific regulatory mechanisms that determine biological aging and lifespan limits across species.
Han Li, Zhen Yang, Wukaiyang Liang ...
· DNA Damage
· Department of Geriatrics, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, People's Republic of China.
· pubmed
DNA damage is considered one of the major contributors to aging. DHCR24, a multifunctional enzyme located within the endoplasmic reticulum (ER), is closely related to DNA damage. Our previous study showed that DHCR24 could delay vascular endothelial cells (ECs) senescence. The re...
DNA damage is considered one of the major contributors to aging. DHCR24, a multifunctional enzyme located within the endoplasmic reticulum (ER), is closely related to DNA damage. Our previous study showed that DHCR24 could delay vascular endothelial cells (ECs) senescence. The relationship between DHCR24 and DNA damage during ECs senescence requires further investigation. Here, we demonstrate that aging activates ATM-mediated DNA damage response (DDR) in human umbilical vein endothelial cells (HUVECs) and mouse pulmonary microvascular endothelial cells (PMVECs), and DHCR24 expression is downregulated. Knocking down DHCR24 in young HUVECs induces the activation of ATM-mediated DDR, which has been confirmed in PMVECs of DHCR24 endothelial-specific knockout mice. Consistently, RNAseq indicated that DHCR24 was essential for cell cycle regulation. Further investigations revealed that both replicatively senescent HUVECs and young HUVECs with DHCR24 knockout exhibited ER stress and mitochondrial dysfunction, which might be attributable to calcium overload resulting from DHCR24 deficiency. In this pathological process, the DHCR24-deficiency-induced upregulation of ENKUR markedly exacerbates calcium overload. Conversely, ENKUR knockdown not only alleviates the ER stress and mitochondrial dysfunction caused by DHCR24 inhibition, but also suppresses the ATM-mediated DDR. Moreover, DHCR24 overexpression reduces the elevated ENKUR levels and simultaneously mitigates DOX-induced calcium overload in HUVECs. Collectively, these findings identify DHCR24-ENKUR-dependent Ca
Longevity Relevance Analysis
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DHCR24 alleviates DNA damage in senescent vascular endothelial cells by preventing ENKUR-mediated calcium overload and subsequent ER stress. This paper is relevant because it identifies a specific molecular mechanism (DHCR24-ENKUR-Ca2+ axis) linking cellular senescence to DNA damage, offering a potential target for interventions aimed at delaying vascular aging and senescence.
Yingchi Zhao, Tianyi Liu, Wei Shu ...
· Protein & cell
· Department of Laboratory Medicine, Laboratory for Diagnosis of Clinical Microbiology and Infection, Research Center for Interdisciplinary & High-quality Innovative Development in Laboratory Medicine, Yuebei People's Hospital Affiliated to Shantou University Medical College; Research Center for Interdisciplinary & High-quality Innovative Development in Laboratory Medicine; Shaoguan Municipal Quality Control Center for Surveillance of Bacterial Resistance; Shaoguan Engineering Research Center for Research and Development of Molecular and Cellular Technology in Rapid Diagnosis of Infectious Diseases and Cancer, Shaoguan 512025, China.
· pubmed
Homozygous pathogenic variants in Ig-like domain of LMNA cause severe segmental progeroid syndromes. Unlike typical HGPS, it remains elusive how these pathogenic variants cause segmental progeroid syndromes. We here reported that affected individuals with LMNAR527C/R527C pathogen...
Homozygous pathogenic variants in Ig-like domain of LMNA cause severe segmental progeroid syndromes. Unlike typical HGPS, it remains elusive how these pathogenic variants cause segmental progeroid syndromes. We here reported that affected individuals with LMNAR527C/R527C pathogenic variant developed an atypical segmental progeroid syndrome characterized by autoimmune features. Mesenchymal stem cells (MSCs) derived from these affected individuals exhibited significant inflammation and cellular senescence. In mice, LmnaR527C/R527C pathogenic variant triggered chronic interferon signaling, exacerbated aging-related pathologies, and even induced thymic lymphomas following ionizing radiation. In addition, this pathogenic variant increased susceptibility to inflammation induced by a high-fat diet or LCMV infection. R527C pathogenic variant disrupted the interaction between Lamin A and DNA-binding proteins, causing abnormal protein aggregation and hyperactivation of the cGAS-STING. Importantly, blocking DNA sensing pathways suppressed inflammation, rescued senescence in affected individual-derived MSCs, and alleviated premature aging in LmnaR527C/R527C mice. These findings establish a homozygous LMNA pathogenic variant as a key driver of inflammation-driven segmental progeroid syndrome and highlight DNA sensing pathways as promising therapeutic targets.
Longevity Relevance Analysis
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The study identifies a specific mechanism (cGAS-STING hyperactivation due to LMNA mutation) linking nuclear envelope defects to inflammation and premature aging, demonstrating that inhibiting this pathway can rescue age-related phenotypes in mice. This work is relevant because it elucidates a root cause of cellular senescence and inflammation, which are hallmarks of aging, and proposes a targeted therapeutic strategy to mitigate these processes rather than just treating symptoms.
Norris, A., Acree, C., Peng, L. ...
· physiology
· Vanderbilt University School of Medicine
· biorxiv
Metabolism is spatially compartmentalized across scales, from distinct tissues to cells and orga-nelles. However, most approaches for studying metabolic activity obscure spatial organization and intra-compartment heterogeneity within bulk biochemical measurements. On the other ha...
Metabolism is spatially compartmentalized across scales, from distinct tissues to cells and orga-nelles. However, most approaches for studying metabolic activity obscure spatial organization and intra-compartment heterogeneity within bulk biochemical measurements. On the other hand, multi-isotope mass spectrometry coupled with scanning electron microscopy (MIMS-EM) maps the fates of labeled nutrients in situ at nanometer-scale resolution, preserving ultrastructural con-text. Here we adapt MIMS-EM for Caenorhabditis elegans, where the compact metazoan body plan uniquely enables visualization of virtually all tissue types and their resident organelles within a single cross-sectional image. Using pulse-chase labeling of dietary carbon and nitrogen, we apply this approach to understanding the metabolic program induced in early stages of dietary restriction (DR). While DR is widely proposed to enhance organismal healthspan by enhancing broadscale turnover, proteomic studies have suggested more nuanced models. MIMS-EM across intact animals reveals that DR induces non-uniform effects between tissues and car-bon/nitrogen resources, accelerating carbon turnover in the muscle and hypodermis, but not in-testine. At the organelle scale, MIMS-EM revealed heterogeneity within mitochondrial networks that was independent of diet and stable over time. Spatial analysis of isotope signatures within intestinal mitochondrial networks also indicated greater similarity between neighboring mitochon-dria than distal mitochondria, supporting models of local mitochondrial mixing. Collectively, these results reveal that DR induces compartment- and resource-specific remodeling strategies across an intact animal while establishing C. elegans MIMS-EM as a powerful platform for multi-scale, integrative models of nutrient handling.
Longevity Relevance Analysis
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The paper demonstrates that dietary restriction induces tissue- and resource-specific metabolic remodeling in C. elegans using a novel MIMS-EM imaging platform. This work is relevant to longevity research as it investigates dietary restriction, a primary intervention for extending healthspan, by providing high-resolution mechanistic insights into how nutrient handling changes across different scales during this process.
Aging of hematopoietic stem cells (HSCs) impairs hematopoietic regeneration and differentiation, contributing to immune aging, systemic inflammation, and reduced lifespan. Strategies to rejuvenate aged HSCs and restore immune homeostasis remain limited. Here, we identify ferropto...
Aging of hematopoietic stem cells (HSCs) impairs hematopoietic regeneration and differentiation, contributing to immune aging, systemic inflammation, and reduced lifespan. Strategies to rejuvenate aged HSCs and restore immune homeostasis remain limited. Here, we identify ferroptotic stress as a key contributor to HSC aging. Mechanistically, increased sphingosine metabolism elevates sphingosine-1-phosphate (S1P), which suppresses HDAC activity and enhances H3K9 acetylation to upregulate lysophosphatidylcholine acyltransferase 2 (Lpcat2), thereby promoting the accumulation of pro-ferroptotic phospholipids in aged HSCs. Genetic or pharmacological inhibition of sphingosine kinase 2 (Sphk2) reduces S1P levels, suppresses Lpcat2 expression, and attenuates ferroptotic stress in aged mouse and human HSCs. Notably, Sphk2 inhibition improves HSC function, restores immune homeostasis, and modestly extends lifespan in aged mice. Together, these findings identify an S1P-HDAC-Lpcat2 pathway linking epigenetic and lipid remodeling to ferroptotic stress and highlight sphingosine metabolism as a therapeutic target for HSC aging.
Longevity Relevance Analysis
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The paper identifies a specific mechanistic pathway (S1P-HDAC-Lpcat2) linking sphingosine metabolism to ferroptotic stress and HSC aging, demonstrating that inhibiting this pathway can restore HSC function and modestly extend lifespan in mice. This work is relevant because it targets a fundamental aging mechanism (stem cell exhaustion via ferroptosis) rather than just treating symptoms, offering a potential therapeutic avenue for age-related immune decline, though the modest lifespan extension and incremental nature of the pathway discovery limit its immediate transformative impact.
Moo, K. G., Orchard, P., Varshney, A. ...
· bioinformatics
· University of Michigan
· biorxiv
Skeletal muscle aging is characterized by the deterioration of muscle function, which can lead to negative quality-of-life outcomes including frailty and sarcopenia. While understanding the mechanisms of this process is increasingly important as the global population ages, previo...
Skeletal muscle aging is characterized by the deterioration of muscle function, which can lead to negative quality-of-life outcomes including frailty and sarcopenia. While understanding the mechanisms of this process is increasingly important as the global population ages, previous molecular studies of skeletal muscle aging have been limited by statistical power and cell type resolution. In this study, we analyzed single-nucleus gene expression and chromatin accessibility data from 287 human skeletal muscle samples from individuals aged 20-79 years to explore sex- and cell type- specific aging effects. Across 467,126 nuclei from 13 cell types, we identify 384 age-associated genes and 4,061 age-associated chromatin regions. These age-associated molecular features are enriched for functional pathways, including metabolic processes, cell-to-cell communication, and senescence Kyoto Encyclopedia of Genes and Genomes KEGG terms. Age-associated closing chromatin was more common across fiber types and sexes than opening chromatin, and was enriched in active enhancer regions while depleted for active transcription start sites. We observe enrichment for specific transcription factor motifs in closing chromatin, including those of glucocorticoid and androgen receptors, both of which play a key role in the maintenance of healthy skeletal muscle. Together, these findings identify an age-associated regulatory shift, largely invisible in matched transcriptomic data, characterized by closing chromatin which reduces accessibility to hormone receptor binding sites and enhancer regions in the muscle fiber epigenome.
Longevity Relevance Analysis
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The study identifies age-associated epigenetic and transcriptomic shifts in human skeletal muscle, specifically highlighting the loss of chromatin accessibility at hormone receptor binding sites, which provides mechanistic insight into the molecular drivers of sarcopenia and muscle aging. This work is relevant as it addresses root molecular mechanisms of aging (epigenetic drift and regulatory decline) rather than just symptoms, but its impact is limited as it is an observational characterization study that describes the phenomenon without proposing or testing specific interventions to reverse or bypass these changes.